Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9576 107 1e-18 seq10951 96.9 3e-15 seq9744 91.5 1e-13 >seq9576 Length=1569244 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||| ||||||||||| | || ||| || ||||||||| || ||||| Sbjct 196306 GTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCG 196247 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | | ||||||||| || | |||||||| || || | |||| Sbjct 196246 GCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 196187 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | | ||| ||| || || || ||| | |||||| ||||||| ||||| ||| Sbjct 196186 ACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTT 196127 Query 18309 TTTACAAAAATTTGCAT 18325 ||||| ||||||||||| Sbjct 196126 TTTACGAAAATTTGCAT 196110 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | || |||||||| || ||||||||||| | || ||| || |||||| Sbjct 195863 TACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTC 195804 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| || ||||| || |||| | | |||||||| || | |||||||| || Sbjct 195803 CAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTG 195744 Query 18236 AATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | |||| ||| | | | | |||||| || || ||| | |||||| | | Sbjct 195743 AATTT-TAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCT 195685 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||||||||| |||||||| ||||| Sbjct 195684 TTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| || ||||| ||||| || || ||||| ||||||| Sbjct 196792 CCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAA 196733 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || |||||||||||||| ||| | || | | ||||||||| || Sbjct 196732 AGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 196673 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||||| |||||| | | | | |||||| || || | Sbjct 196672 ATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACT 196613 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| ||||||| |||| || ||||| || |||||||| Sbjct 196612 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||| | ||| |||| ||||||||||||||||| || || || || || | Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | || || || ||| |||| ||||||||||| || || Sbjct 195592 AATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGA 195533 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || ||||| | || || || | | ||| ||| || ||||| Sbjct 195532 ATGCCTTCTTTGTCCTGAATTT-TAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||| ||| ||||||| || || || || || || || |||||||| Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 >seq10951 Length=171266 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| || | || ||||| ||||| ||||||||||||| || || || |||| Sbjct 139793 AGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 139852 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| | | ||||||||| ||| | |||||||| || Sbjct 139853 TCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCT 139912 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | ||| ||||| |||||| || | |||||| | Sbjct 139913 TGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTC 139972 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || ||||| | || || || || || ||||||||| Sbjct 139973 TTACCGGTGAGGGTCTTGACGAAGATCTGCATTTTT 140008 >seq9744 Length=475756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | |||||| | || || || ||||| |||||||| ||||| |||| | Sbjct 177513 CCTCCGCGAAGACGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGAC 177572 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| ||||||||||| || | || | | ||||| || ||| Sbjct 177573 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 177632 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| |||| |||||| | | | | || || ||||| | Sbjct 177633 ATACCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAACT 177692 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| || |||| || ||||| || || || |||||||||||| Sbjct 177693 TCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 177740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379249283374815