Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq10820 203 6e-47 seq10162 127 4e-24 >seq10820 Length=150301 Score = 203 bits (224), Expect = 6e-47 Identities = 461/685 (67%), Gaps = 9/685 (1%) Strand=Plus/Plus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 |||||| | ||||| ||| | ||||| ||| || || |||||||| | ||||| Sbjct 111539 AGGAGTCACAAAGGATGATCGCACTGGTGTAGGTACCTTAAGTATTTTTGGTGCACAAAT 111598 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAG 35256 ||| ||| | | || | || || |||| | | || || || | || ||||| Sbjct 111599 GAGATTCGATATGCGCAA-GAG-CT-TTCCTTTATTGACAACTAAACGGGTATTTTGGAG 111655 Query 35257 AGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGC 35316 || |||||| || ||| | | ||||||| | ||| || | || || ||||| Sbjct 111656 AGCAGTTGTTGAGGAATTGTTATGGTTCACACGTGGCTGCACTAATGCAAAGGAATTACA 111715 Query 35317 CAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGG 35376 | || || || ||||||||| | | ||| | | || |||||||| || | || Sbjct 111716 GGACAAAAATATCCACATCTGGGATGGTAACAGTACTCGCGAATTTTTAGATAAGCTTGG 111775 Query 35377 GTTATAC-GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATT 35435 || ||| ||| | |||||| ||| |||| || ||||| ||||||||||||||||||| Sbjct 111776 CTT-TACAGATCGTAAAGAGGGCGATCTGGGTCCGGTATATGGATTCCAATGGCGTCATT 111834 Query 35436 TTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGG 35495 ||||||| ||||| || ||| |||||||| |||| || || ||| | | Sbjct 111835 TTGGTGCAAAATATCGCACTTGTGACGATGATTATACCAATGAGGGAATAGACCAACTTG 111894 Query 35496 CCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555 | ||| || | | || | | | |||| ||| ||| | || || ||||| || | Sbjct 111895 CAAATGTAATCCACACAATACGCACAGATCCCGATAGCAGACGCATTATAATGACCGCTT 111954 Query 35556 GGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTT 35615 |||| |||| ||| | || | |||||||| || |||||||| | |||||||||| Sbjct 111955 GGAACCCTAGCGATATACATTTAATGGCTCTACCACCATGCCATTGTATGGCTCAATTTT 112014 Query 35616 ATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGG 35675 ||||||| |||| |||||||| || ||| || || || || | ||| | || ||| Sbjct 112015 ATGTGGCAAATGATGAATTGTCCTGTCAGCTGACCCAACGTAGTGCTGATATGGGACTGG 112074 Query 35676 GCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGG 35735 |||| || |||||||| || || ||| || | | ||| || |||| ||| || | Sbjct 112075 GCGTTCCATTCAATATCGCCTCTTACGCTTTGTTAACTTATATGATTGCCCACATAACAG 112134 Query 35736 GTCTAAAACCGGGAGAGTTTATCCTCACTC--TTGGTGACGCACACATTTATAATACCCA 35793 |||| ||||| || || ||||| |||||| | ||||| |||| | ||| | || Sbjct 112135 GTCTTAAACCAGGCGATTTTAT--TCACTCATTGGGTGATACACATGTCTATTTAAATCA 112192 Query 35794 CATTGAGGTGTTAAAGAAGCAGTTG 35818 | |||| |||||| |||||||| Sbjct 112193 CGTTGAACCATTAAAGGAGCAGTTG 112217 >seq10162 Length=1180275 Score = 127 bits (140), Expect = 4e-24 Identities = 282/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 || |||| |||||||| ||||| || || || || || ||| || || ||||| || | Sbjct 71775 TTATTGCGTTTGCTGCCGTTGAGGGTATATTTTTCAGCGGTAGTTTTGCCTCCATCTTTT 71716 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | ||||||| | || | ||||||||| || || || | | Sbjct 71715 GGCTTAAGAAACGTGGTCTAATGCCTGGCTTGACATTCTCCAATGAATTGATCTCGCGTG 71656 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 ||||||| | ||| | || ||||| || |||| ||| | | || || |||| Sbjct 71655 ACGAAGGCTTGCATTGTGATTTTGCCGTACTGATGTTCAAATATC-TGGTGCAGAAACCC 71597 Query 102096 CATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 | ||| |||| | ||| ||||||| || || || || ||||||||| ||||| | Sbjct 71596 -AGCAA-AGAACGTATTATTGAAATCATCCGAGATGCTGTAAAAATTGAACAGGAATTCC 71539 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | || | | ||||| ||| ||| | |||||||| || | || ||| | || | Sbjct 71538 TAACTGAAGCTCTGCCATGTAATTTAATTGGAATGAATTGTGAATTAATGTCGGAATATA 71479 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||||||||| || ||| || |||||||| ||| | | || ||| ||| | Sbjct 71478 TTGAATTTGTTGCCGATCGTCTGCTGGTTGAATTGGATGTTGGCAAAATCTACAATACCA 71419 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 || || ||||| |||||||| | ||||| | || ||| || || || |||||| Sbjct 71418 AAAATCCTTTCCCCTTCATGGAAATGATTTCATTGGATGGTAAAACAAATTTCTTTGAA 71360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989324244405085