Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10186 554 6e-153 seq10162 376 3e-99 seq9684 100 4e-16 >seq10186 Length=270785 Score = 554 bits (614), Expect = 6e-153 Identities = 1500/2272 (66%), Gaps = 40/2272 (2%) Strand=Plus/Plus Query 62040 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 62099 |||| || || ||||||| | || || || || || |||| ||| ||||| ||||| Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTC 27587 Query 62100 TTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62158 || || || || || ||| || ||||| || || | ||| ||| | || || Sbjct 27588 TTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTC 27646 Query 62159 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62218 |||| || ||||| | |||||||| |||||||||||||| || | || || ||||| Sbjct 27647 GGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCAT 27706 Query 62219 TTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTT 62277 ||| ||| | ||||| | ||||||||||| ||||| |||| ||| | | | |||| Sbjct 27707 TTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGA-TCTCTT 27765 Query 62278 CTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCA-TAATCCTATTCTTGATC 62333 |||| | | |||| || || || |||| ||| | | ||| ||||||| || Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGG-CTAGAAATGATCTTATTCTTCATA 27824 Query 62334 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGG 62393 || |||| ||| || | ||||| ||| | | || | ||| | || || | | Sbjct 27825 TCTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTA 27884 Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 ||||| || || | ||| | || ||||||||||| || || || || | || ||| Sbjct 27885 AATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCA 27944 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513 ||||| |||| ||| || || || || ||||| ||||| ||||| | | || || Sbjct 27945 TTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTG 28004 Query 62514 CTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 | | ||| ||| | | ||||| | ||||| | |||||| ||| | || | | Sbjct 28005 CGCACACC--ATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGG 28062 Query 62572 GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTAC----A 62627 |||| | ||| || |||||||| || || ||| |||| | Sbjct 28063 GTACTTTATTCCACATATCATACTGAAGAATACCTTTGCT----TACAGGGCTACCGGGA 28118 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 ||||| ||||| || || || |||||||| |||| |||||| ||||| || ||||| || Sbjct 28119 TATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAG 28178 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT--GCTTCCGGGCTATCAAATGGAT 62745 ||||| ||||| || || | || ||| || ||||| || | || ||| | || | Sbjct 28179 TAAATTGTTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGGGGT 28236 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 || | ||||| | | ||| || || ||||| ||||||||||| || || | ||||| Sbjct 28237 AACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTC 28296 Query 62806 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62865 || |||| || || ||||| || | ||||| || || || || || |||||||||| Sbjct 28297 TCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGA 28356 Query 62866 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62925 |||| | || || ||| |||||| ||||| ||| |||||| | | ||| Sbjct 28357 GATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTTCTG 28416 Query 62926 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 | |||||||| || | || || |||| |||||| || || | |||| || Sbjct 28417 GAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTG 28476 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 ||| || | | || || || || | ||| || || ||||| || || | |||||||| Sbjct 28477 CCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTT 28536 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 |||||||||| || || || || || | || || | || || || ||||| | | Sbjct 28537 GATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTT 28596 Query 63103 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTT 63161 | | ||| || || || ||| | || || | || |||| | ||| | | | | Sbjct 28597 GGGCTTCGATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCTATTGGCTTTGCCT 28655 Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 || |||||||| || | | ||| || ||||||||||| |||| | | | Sbjct 28656 TCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCC 28715 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||||| | |||||||| | |||||| || || | || | || || |||||||| Sbjct 28716 GGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAAC 28775 Query 63282 AGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||||| ||||||||||| || || ||| |||||||| | | ||| || || || ||||| Sbjct 28776 AGATCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGT 28834 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 || || || | ||| | ||| | | |||||| |||||||| |||||||| || ||||| Sbjct 28835 GTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGC 28894 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| |||||| || || ||||| | || | || || || | || Sbjct 28895 AAATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATAC 28954 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 || ||||| || | | ||| || ||| | ||||| || |||| ||| | ||| | Sbjct 28955 CCTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTT 29014 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 ||| || || | | |||||| || ||||| || ||| ||| || || | ||| Sbjct 29015 GGCGCGTATACAATGGACATTGAT--GCCAATTCCTCCGGCCGATTTCGATATCATGGCG 29072 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || ||| | | | | || ||||| || |||| | | |||| | || || ||| Sbjct 29073 CACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAA 29132 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || |||| ||| | || | || | ||| ||||| || |||||||| || ||| Sbjct 29133 CAAGACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTA 29192 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || | ||| ||||| | ||||| ||||| || || | || || || ||| Sbjct 29193 AAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGT 29252 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || || || |||||||| | |||||| ||||| || || |||| || || ||| Sbjct 29253 ATGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATT 29312 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 |||||||| || || ||||||| |||||||| |||||||| ||||| || || || Sbjct 29313 TTCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGA 29372 Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATA 63938 || |||| ||| |||||||||| ||| || || | || | || || | | | Sbjct 29373 TCATAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAATGAAA 29431 Query 63939 CT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 63997 || || || || || | || | || ||| | ||| ||| | ||||| Sbjct 29432 CTCCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACT 29491 Query 63998 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGC 64057 ||||| || || | || || |||||||| || ||||| |||| || || | ||| Sbjct 29492 GATCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGC 29551 Query 64058 GGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAG 64117 || || | |||||||| | ||| | || || ||| || || |||| ||||||| Sbjct 29552 TGCCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAA 29611 Query 64118 AGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTAT 64177 | | ||||||| | || || || ||| ||| | || | ||| ||| | | | ||| Sbjct 29612 ATTATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTAT 29671 Query 64178 TTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGT 64237 || |||||| | | |||| | || ||||||||||| | ||| || ||||| || Sbjct 29672 GGCAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGT 29731 Query 64238 GATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAA 64288 ||| || || || ||| || | ||||||| |||| ||| |||| ||||| Sbjct 29732 GATCTTGTCGAA-ATGTACCTCTTCCTTGCGACCATCTCGCTTAACCACAAA 29782 >seq10162 Length=1180275 Score = 376 bits (416), Expect = 3e-99 Identities = 594/843 (70%), Gaps = 26/843 (3%) Strand=Plus/Plus Query 33285 CCCATTTTTTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 ||||||||| ||||||||||||| ||| ||| || ||||| ||||| || |||||| Sbjct 71332 CCCATTTTT-GGTATTCACCCAC---TTTGCGTTCAAAGAAATTTGTTTTACCATCCAAT 71387 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || |||||||||| || ||||| | |||||| ||||| || ||||| Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAAT 71447 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 ||| | || | ||| || || ||||| |||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | ||| ||| ||||| |||| || ||||| |||||||| ||| |||| | Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 33522 GTTATAATA--AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCA 33579 || || ||| ||| ||||| || ||| || | | || ||| ||||||| Sbjct 71568 CGGATGATTTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 33580 AACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGA 33639 || ||||| || |||| || ||||| | || ||||| || || || || | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 33640 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGA 33699 || |||||||| ||||| || ||||||||||| ||||| || || ||| || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 33700 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGCGCTGTCA 33755 | || || || || |||||||| ||||||| | |||||| || ||| ||| | Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTG--A 71803 Query 33756 TGTA-TCCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || | |||| ||| ||||||||||||||||| || || ||||| ||||| | Sbjct 71804 TGAAATCCA----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAA 71859 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||||||| || ||||| | || || | || |||| || |||||||||| || || Sbjct 71860 TGGCATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATAC 71919 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||||| || |||| ||||| ||||| || || || || ||||| || | || | Sbjct 71920 TATACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTT 71979 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 | || | ||||| ||| | || ||||| ||||||||||||| || || |||||| Sbjct 71980 CTGTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAG 72039 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || ||||| |||| ||||| ||| ||||| ||| | ||||| | ||| Sbjct 72040 AGGCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTAT 72099 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||||||| | | ||||| || | ||| ||||||||||||||||||||||| ||||||| Sbjct 72100 CCCAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTG 72159 Query 34111 CCT 34113 ||| Sbjct 72160 CCT 72162 >seq9684 Length=559441 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 28699 ACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 28758 ||||| ||| || ||||| ||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 346052 ACCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAA 346111 Query 28759 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28803 ||| | | |||||| ||||||||||| ||||| | ||||| || Sbjct 346112 ATGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629656311585360