Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10186 304 1e-77 seq10162 244 1e-59 >seq10186 Length=270785 Score = 304 bits (336), Expect = 1e-77 Identities = 980/1499 (65%), Gaps = 33/1499 (2%) Strand=Plus/Plus Query 37130 GATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATG 37189 |||| |||| | ||| || || || | ||| | | ||| || ||||| || || | Sbjct 27871 GATTGACAATATTAAATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGG 27930 Query 37190 GTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTA 37249 | |||| || |||||||||| | || || | |||||| ||||||||||||||||||| Sbjct 27931 GCTCAAATGATTCATTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTA 27990 Query 37250 TTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCC 37309 || | || | || ||||| | |||| | ||||| ||| |||||||| Sbjct 27991 AGAGCAATGAGTTGCGCACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCC 28050 Query 37310 ATAAATCTGTTGGGTTCTTTAA-CCACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368 | || || || |||| ||||| |||||||||||| || ||||||||||| || | || Sbjct 28051 ACAAGTCGGT-GGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGG 28109 Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGT 37428 | || |||||| ||||| || || | | | ||| ||||| ||||| | || | Sbjct 28110 CTACCGGGATATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAG 28169 Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG 37488 || |||| || ||||||||||||||||| ||| | | | || | ||| || || Sbjct 28170 GCACCATAGTAAATTGTTTCGAAAATTTGCTGATTAAGCTTGTAGGCCTGTTCACTTTCA 28229 Query 37489 AATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGT 37548 | | || | || | || | ||||| ||||| || ||||| ||||| ||||| Sbjct 28230 TAGGGGTAACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGA 28289 Query 37549 CTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATT 37608 | |||| || |||| || | | ||| || |||||| || ||||| || || ||| Sbjct 28290 CGATGTCTCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATT 28349 Query 37609 TTATTTAGATTTT---TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAAT 37665 ||||| ||||| |||| | || | ||| ||| || || | ||| || | | Sbjct 28350 TTATTGAGATTGCGCGTAACAACC-TTGGCCACATTCTTC--AATTTCTTGAA-ATCA-T 28404 Query 37666 ACGTTATT-----ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 |||| || | | ||||| || | | |||| || | | |||||| || |||| Sbjct 28405 ACGTCTTTTCTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAA 28464 Query 37721 CTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 |||||| || | | | | | ||| |||||||| | ||| || || | || || Sbjct 28465 TTTCATCAG-GTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTG 28523 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 || | ||| |||||| || ||| |||| ||||| | || ||||| || ||| Sbjct 28524 CCAATATTTTGTTGATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTT 28583 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGC 37898 ||| ||| | ||| || ||||| || | ||||| | || ||||| ||| || | Sbjct 28584 CCTGTTTCCACTTGGGCTTCGATGATGGCAAACCATAG-CGCCTGCGCTTTTACGGTC-C 28641 Query 37899 TTTAAtttttttCTTTGTTT-CGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957 | | ||| ||| ||| |||||| | || | ||| | ||| || | ||||| | Sbjct 28642 TATTGGCTTTGCCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACA 28701 Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 |||| || || ||||||| | |||||||||||| ||||| || ||| | ||| | Sbjct 28702 CATCTTGTAGCCCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGA 28761 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATAT 38076 | || | |||||| | ||| || | ||| || | ||| || | |||| ||| | || Sbjct 28762 CACGCTTCATAAACAGATCGGGAATCCA-AAGGGCGTAGAAAAGATCTCTGGCACGATGC 28820 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || ||| || || |||| | ||| || || ||||| | ||||||||| Sbjct 28821 TCTTCCTTGCCTGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGT 28880 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | ||| || | | ||| || || | ||| | || || |||| | ||| | | Sbjct 28881 TCCAAATAGATGGCAAATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCA 28940 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 || || ||| |||||||| || |||| |||||| ||| |||| || | |||| Sbjct 28941 ACATTGTTGAATACCCTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCA 29000 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT----CCTATTCCACCTGCATG 38312 ||| |||| ||||| || |||||| || |||| | || ||||| || || Sbjct 29001 ATAGAAGTTCCCTTGGCGCGTATA----CAATGGACATTGATGCCAATTCCTCCGGCCGA 29056 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| ||||| | ||||| |||| | | | || |||||||| || ||| || Sbjct 29057 TTTCGATATCATGGCGCACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCAC 29116 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCA-ATGGAGTTCCGGCGTTAAATAATG 38431 || | || | |||||| |||| || || | || | || | || ||||| | Sbjct 29117 CATGGTCAGGAGGAAACAAGACGACAGCTGGGGGAGATTG-GTGGCAGCAGCAAATAGAG 29175 Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT 38491 | ||||| ||||| | || | |||||| | | || || || || || || ||| Sbjct 29176 TTGGAGAAGCATGAGTAAAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCAT 29235 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 | || || | || || || || | || || | ||| ||||| ||||| || || || Sbjct 29236 CAATGTCTTCACCATGTATGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCG 29295 Query 38552 TTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 || || |||| ||| | | |||||| |||| |||||||| | |||||||||| Sbjct 29296 CAATCTTTCCATTCATTTTCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAA 29354 >seq10162 Length=1180275 Score = 244 bits (270), Expect = 1e-59 Identities = 557/826 (67%), Gaps = 18/826 (2%) Strand=Plus/Plus Query 11332 CCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGA 11391 |||||| ||||| ||||||| ||| ||||| || ||||| || ||||| || | ||| Sbjct 71331 CCCCAT-TTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGA 71389 Query 11392 TATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTC 11451 || ||||| ||| |||||||| | |||| ||| ||| || | | || || Sbjct 71390 AATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTC 71449 Query 11452 TGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACC 11511 | | | ||| || || ||||| ||||| | |||||||| ||||||||| || Sbjct 71450 AACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCC 71509 Query 11512 TATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA-- 11569 || | || || | ||| | || | || |||| ||| || || || ||||| Sbjct 71510 AATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCG 71569 Query 11570 -ATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 |||||| || | | ||| ||| || ||| || | | || ||| ||||| | Sbjct 71570 GATGATT-TCAA--TAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAG 71626 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 |||||||||||||| || |||||||| | || | |||||| || ||||| || Sbjct 71627 TACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAA 71686 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| | || ||||| || | |||||| || | ||||| ||| || || Sbjct 71687 GCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAA 71746 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GA 11805 ||| ||||| || || ||||| || | || | ||||||| | || | || | || Sbjct 71747 TATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATGA 71806 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||| ||||||||| || ||||| || ||| | ||||||||| || || || Sbjct 71807 AATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATT 71866 Query 11866 --AAATAAATGCATTTTTTCTATATTATCTCTTACA-TATGTATCTATTAATAAACTATA 11922 ||| | || || || || |||| |||||||| || | | |||||| Sbjct 71867 GAAAAGATATTCACGTTG---ATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATA 71923 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||||| || |||| ||||||||| || ||||| || |||||||| || || || |||| Sbjct 71924 CATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGT 71983 Query 11983 ACACT-GTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 |||| | || || | || | ||| ||||||| ||||| |||||||||||| | Sbjct 71984 -CACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGG 72042 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 || ||||| || || | ||| ||| || || ||| | | |||||| |||||| Sbjct 72043 CGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCC 72102 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 ||||| ||| ||||| || | ||| |||||||| || |||||||| Sbjct 72103 AATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468404816655280