Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10186 551 7e-152 seq10162 369 5e-97 seq9684 95.1 2e-14 >seq10186 Length=270785 Score = 551 bits (610), Expect = 7e-152 Identities = 1496/2271 (66%), Gaps = 38/2271 (2%) Strand=Plus/Plus Query 64833 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 64892 |||| || || ||||||| | || || || || || |||| ||| ||||| ||||| Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTC 27587 Query 64893 TTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 64951 || || || || || ||| || ||||| || || | ||| ||| | || || Sbjct 27588 TTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTC 27646 Query 64952 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 65011 |||| || ||||| | |||||||| |||||||||||||| || | || || ||||| Sbjct 27647 GGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCAT 27706 Query 65012 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTT 65070 ||| ||| | ||||| | ||||||||||| ||||| |||| ||| | | | |||| Sbjct 27707 TTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGA-TCTCTT 27765 Query 65071 CTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCT 65127 |||| | | |||| || || || |||| | || ||| ||||||| || | Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 65128 CATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAA 65187 | |||| ||| || | ||||| ||| | | || | ||| |||| || | | || Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 65188 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCAT 65247 |||| || || | ||| | || ||||||||||| || || || || | || |||| Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 65248 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 65307 |||| |||| ||| || || || || ||||| ||||| ||||| | | || || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 65308 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 65365 | ||| ||| | | ||||| | ||||| |||||| ||| | || | || Sbjct 28006 GCACACC--ATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGG 28063 Query 65366 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTAC----AT 65421 ||| || |||||||| || || ||| |||| || Sbjct 28064 TACTTTATTCCACATATCATACTGAAGAATACCTTTGCT----TACAGGGCTACCGGGAT 28119 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 |||| || || || || || |||||||| ||||||||||| ||||| || ||||| || | Sbjct 28120 ATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGT 28179 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATA 65539 |||| |||||||| || | || ||| || ||||| || | || ||| | || || Sbjct 28180 AAATTGTTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGGGGTA 28237 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | | ||||| | | ||| || || ||||| ||||||||||| || || | |||||| Sbjct 28238 ACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCT 28297 Query 65600 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 | |||| || || ||||| || | ||||| || || || || || ||||||||||| Sbjct 28298 CATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAG 28357 Query 65660 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA- 65718 ||| | || || ||| |||||| ||||| ||| |||||| | || ||| Sbjct 28358 ATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTTCTGG 28417 Query 65719 --TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 65776 | |||||||| || | || || |||| ||||||||| || | |||| || | Sbjct 28418 AGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGC 28477 Query 65777 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 || || | | || || || || | ||| || || ||||| || || | ||||||||| Sbjct 28478 CGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTG 28537 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 ||||||||| || || || || || | || || | || || || ||||| | || Sbjct 28538 ATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTG 28597 Query 65897 AGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 65955 | ||| || || || ||| | || || | || |||| | ||| | | || Sbjct 28598 GGCTTCGATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCTATTGGCTTTGCCTT 28656 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 | |||||||| | || | | ||| || ||||||||||| |||| | | || | Sbjct 28657 CCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCG 28716 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 |||||| | |||||||| | |||||| || || | || | || || |||||||| | Sbjct 28717 GACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACA 28776 Query 66076 GATCAGGAATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 |||| ||||||||||| || || ||| | |||||||| | ||| || || || ||||| Sbjct 28777 GATCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGTG 28835 Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 || || || | ||| | ||| | | |||||| ||||||| |||||||| || ||||| Sbjct 28836 TTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCA 28895 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 | | ||||| |||||| || || ||||| | || | || || || | || Sbjct 28896 AATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACC 28955 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTT 66314 || ||||| || | | |||||||||||| ||||| || |||| ||| | |||| | Sbjct 28956 CTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTG 29015 Query 66315 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 66372 || || || | | |||||| || ||||| || ||| ||| || || | |||| Sbjct 29016 GCGCGTATACAATGGACATTGAT--GCCAATTCCTCCGGCCGATTTCGATATCATGGCGC 29073 Query 66373 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 66432 | ||| | | | | || || || || |||| ||| |||| | || || |||| Sbjct 29074 ACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAAC 29133 Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492 | |||| ||| | || | || | ||| ||||| || |||||||| || |||| Sbjct 29134 AAGACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTAA 29193 Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 66552 | | ||| ||||| | ||||| ||||| || || | || || || ||| | Sbjct 29194 AGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTA 29253 Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612 | || || || |||||||| | |||||| ||||| || || | ||||| || |||| Sbjct 29254 TGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATTT 29313 Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 66672 ||||||| || || ||||||| |||||||| |||||||| ||||| || || || | Sbjct 29314 TCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGAT 29373 Query 66673 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATAC 66732 | |||| ||| |||| ||||| ||| || || | || |||| || | | || Sbjct 29374 CATAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAATGAAAC 29432 Query 66733 T-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCC 66791 | || || || || | || | || ||| | | | ||| | ||||| Sbjct 29433 TCCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACTG 29492 Query 66792 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 66851 ||||| || || | || || ||||| || || ||||| ||||| || || | || Sbjct 29493 ATCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGCT 29552 Query 66852 GCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 66911 || | | |||||||| | ||| | || || ||| || || |||| ||||||| | Sbjct 29553 GCCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAAA 29612 Query 66912 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 66971 | ||||||| | || || || ||| ||| | || | || ||| | | | ||| Sbjct 29613 TTATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTATG 29672 Query 66972 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 67031 || |||||| | | ||| | || |||||||| || | ||| || ||||||||| Sbjct 29673 GCAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGTG 29732 Query 67032 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAA 67081 || || || || ||| || | ||||||| |||| ||| |||| ||||| Sbjct 29733 ATCTTGTCGAA-ATGTACCTCTTCCTTGCGACCATCTCGCTTAACCACAAA 29782 >seq10162 Length=1180275 Score = 369 bits (408), Expect = 5e-97 Identities = 591/841 (70%), Gaps = 22/841 (3%) Strand=Plus/Plus Query 35861 CCCATTTTTTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTTTTACCTTCTAAT 35917 ||||||||| ||||||||||||| ||| ||| || ||||| |||||||| || ||| Sbjct 71332 CCCATTTTT-GGTATTCACCCAC---TTTGCGTTCAAAGAAATTTGTTTTACCATCCAAT 71387 Query 35918 GATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAAT 35977 || || |||||||||| ||| ||||| | ||| || ||||| || ||||| Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAAT 71447 Query 35978 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 36037 ||| | || | ||| || |||||||| |||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 36038 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 36097 || || | ||| ||| ||||| |||| || ||||| |||||||| || || ||| Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 36098 GTTATAATAG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA 36155 || || ||| ||| ||||| || ||| | || | || ||| ||||||| Sbjct 71568 CGGATGATTTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 36156 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 36215 || ||||| || || | || ||||| | || ||||| ||||| || || | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 36216 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 36275 || |||||||| ||||| || ||||||||||| ||||| ||||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG 36333 | || || || || || ||||| ||||||| | |||||| || || | | | ||| Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATG 71805 Query 36334 TA-TCCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | |||| ||| ||||||||||||||||| || || |||||||| || || Sbjct 71806 AAATCCA----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATG 71861 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 ||||| || ||||| | || || | || |||| |||||||| |||| || |||| Sbjct 71862 GCATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTA 71921 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || |||| ||||| ||||| ||||| || || ||||| || | || || Sbjct 71922 TACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCT 71981 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 || | || || ||| | || ||||| ||||||||||||| || || || ||| | Sbjct 71982 GTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAG 72041 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 || || ||||| |||| ||||| ||| ||||| ||| || ||||| | ||| | Sbjct 72042 GCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCC 72101 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 |||||| | | ||||| || | ||| ||||||||||||||||||||||| ||||||||| Sbjct 72102 CAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCC 72161 Query 36689 T 36689 | Sbjct 72162 T 72162 >seq9684 Length=559441 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 31218 ACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAAT 31277 ||| | ||| || ||||| |||| |||||||| ||||||||||| ||||| ||||||| Sbjct 346052 ACCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAA 346111 Query 31278 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322 ||| | | |||||| ||||||||||| ||||| | ||||| || Sbjct 346112 ATGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658004250173080