Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10186 212 6e-50 seq9576 123 2e-23 seq9744 98.7 1e-15 >seq10186 Length=270785 Score = 212 bits (234), Expect = 6e-50 Identities = 1185/1870 (63%), Gaps = 55/1870 (3%) Strand=Plus/Plus Query 152710 GGTTAGGAGCGACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACA 152769 || || || | || ||||| || || ||||||||| || || || ||||| |||| Sbjct 27520 GGCTACGATCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACA 27579 Query 152770 TGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAG 152829 ||||||||||||||||| | |||| || | || | || | || || | || Sbjct 27580 TGCCCGTCTTGAGGCCAGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAAT 27639 Query 152830 TAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTG 152889 | || ||||| | || | |||||||||||||| ||||| || || || || | ||| | Sbjct 27640 TGGGTTCGGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGG 27699 Query 152890 CTGCCATGTCGATCATGAATTTTCCGTTGTTGTGCCAGCA--TTCCCAGATTGTCATGTA 152947 | ||||| | ||| ||||| || | | | |||||| | || |||| Sbjct 27700 CGGCCATTTTGATG-----------GTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTA 27748 Query 152948 CAGCTTTTTAATGTTGTCGGGAATTTCATCTATGGAAGCTATCGATCCTCGGTTTGCCAT 153007 |||| | || | | |||||| | || || ||| || || ||| | | || Sbjct 27749 AAGCTCTCGGATCTCTTTGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAAT 27808 Query 153008 GATCCTTTTCCGCATA-CTACTTGTGTACAGATTCAATGCGATTAGATCATCGACCAAGT 153066 |||| | ||| |||| || | | ||| || | | || | | ||| | || ||| | Sbjct 27809 GATCTTATTCTTCATATCTTCATCCC-ACAAATCAAGTTCGGTCAAATCCTTGAGCAAAT 27867 Query 153067 AGCGGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGA 153125 | | ||||||| | |||||| || || | |||||| | | | ||| |||| Sbjct 27868 GGTGATTGACAATATTAAATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGT 27927 Query 153126 AACGGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTAC 153185 | || ||||| || || || ||| | || || || || | || || ||||| Sbjct 27928 AG-GGCTCAAATGATTCATTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGT 27986 Query 153186 GCCACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAG 153245 || | ||||| || || || | || || || || || ||| | | | ||| Sbjct 27987 GCTAAGAGCAATGAGTTGCGCACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAA 28046 Query 153246 TCCCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCT 153305 ||||| || || |||| |||||||| ||| || || | || |||| ||| | Sbjct 28047 TCCCACAAGTCGGTGGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACA 28106 Query 153306 TTGCTACCGGCAAACGTGCTATACGGCTCA-CTGTCAGACGCCAGTTTCAAACTGGCATC 153364 |||||||| | | || ||| || || || || | ||||||| ||||||| || Sbjct 28107 GGGCTACCGGGATATGTTTCATAGGGACCATCTTTCTCA-GCCAGTTCACAACTGGCCTC 28165 Query 153365 GAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCT 153424 | || ||| || | |||||| |||| || | || || ||| || || Sbjct 28166 CAAGGCACCATAGTAAATTGTTTCGAAAATTTGCTGATTAAGCTTGTAGGCCTGTTCACT 28225 Query 153425 CACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTAT 153484 | || || |||| || | | | || || |||||||| | ||||| || || Sbjct 28226 TTCATAGGGGTAACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAAT 28285 Query 153485 GGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGAT 153544 ||||||||| | |||||| || ||| |||| | | |||||| | ||| ||| || Sbjct 28286 GGGACGATGTCTCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAAT 28345 Query 153545 AATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAA 153604 |||||||| | | | | ||| || ||||| | ||| | |||||| | Sbjct 28346 GATTTTATTGAGATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATA 28405 Query 153605 CGT---TCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGT 153661 ||| | | | | | | | | |||| |||||| ||||| || ||||| ||| | Sbjct 28406 CGTCTTTTCTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAAT 28465 Query 153662 TTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCC 153721 ||| || || || | || | || ||||| | |||||||||||||||||| ||| ||| Sbjct 28466 TTCATCAGGTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCC 28525 Query 153722 GCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCC 153781 ||| |||||| || ||||| || |||||||| ||| | ||||| || || || || Sbjct 28526 AATATTTTGTTGATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCC 28585 Query 153782 GGTTTCGGCTTGAATTTCTATAATAGTACGCATCAATGTGACCGCGGGCATTTGATCGCG 153841 ||||| |||| ||| || || | | | || | | | ||| ||| | | Sbjct 28586 TGTTTCCACTTGGGCTTCGATGATGG--CAAACCATAGCGCCTGCG---CTTTTACGGTC 28640 Query 153842 AAACTGGC----CCTT-GTCTTCGTAGTGTTTGTACCAGTATTCAAACTC--ATCACCAA 153894 | |||| |||| | |||||| | || ||| | |||||| || || ||| Sbjct 28641 CTATTGGCTTTGCCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCAC 28700 Query 153895 ACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTT 153954 || | |||| ||| | ||||||| || |||||||| || ||||| |||||| |||| Sbjct 28701 ACATCTTGT--AGCCCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTT 28758 Query 153955 GAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCG 154014 || || |||||| | |||||||| ||| ||||||| | || || | || || Sbjct 28759 CGACACGCTTCATAAACAGATCGGGAATCCAAAGGGCGTAGAAAAGATCTCTGGC--ACG 28816 Query 154015 -TG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCA 154072 || ||||| |||| ||||| | | || | || | || || ||||||| Sbjct 28817 ATGCTCTTCCTTGCCTGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCA 28876 Query 154073 CGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTGCCG---CCCTGATTTACGTGACG 154129 ||||||| || | || ||||| ||| |||||| || |||| || | ||| Sbjct 28877 TGGTTCCAAATAGATGGCAAATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACG 28936 Query 154130 CACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGA 154189 | | ||||||||| |||| | |||||| | | ||| ||| || || || || Sbjct 28937 TGCAACATTGTTGAATACCCTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCC 28996 Query 154190 TTTAATCTTGCTGTTGC--GGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCG 154247 || | | ||| | | | || | | | || || | ||||| || ||| | Sbjct 28997 GGCAA--TAGAAGTTCCCTTGGCGCGTATACAATGGACATTGATGCCAATTCCTCCGGCC 29054 Query 154248 TGTTTGGAGATCATGGCGCAATCGTTCAA-TGTGTTATAGATACCACGAATGCTATCGCT 154306 ||| || ||||||||||| | |||||| | || | ||||| ||| ||| Sbjct 29055 GATTTCGATATCATGGCGCACT-GTTCAACAGACTTGAAAATACCTTCAATCGAATCAGC 29113 Query 154307 TTCCATGGTCAATAGGAAACATGAACTCATCT-GCGGAGTTGGAGTGCCGGCAGCAAACA 154365 ||||||||| |||||||| || || || | |||| | | ||| | |||||||| | Sbjct 29114 CACCATGGTCAGGAGGAAACAAGACGACAGCTGGGGGAGATTG-GTGGCAGCAGCAAATA 29172 Query 154366 TGGTCGGGCTTGCGTGCGTGTACATCTTTGTGCTCAAA--AATTTATAAGACTTTATGGC 154423 || || || | | ||| | || | ||| || || |||| || ||||| Sbjct 29173 GAGTTGGAGAAGCAT--GAGTAAAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGC 29230 Query 154424 ATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATACGCATGTGCATGTGTTGAATCCT 154483 | ||||||||| || ||| || || | ||| | ||||||| ||||||||||| ||| Sbjct 29231 AGCATCAATGTCTTCACCATGTATGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCT 29290 Query 154484 TTCGGCAACTTTTTCGTTAATTTTTATCAGGTAGCCATTTTTGAGCGTTTGATATCCAAA 154543 || |||| ||| | || ||||| | || || ||| | |||| | ||||||| Sbjct 29291 CTCCGCAATCTTTCCATTCATTTTCAACAAATACGACCTTTCCAATGTTTTAAATCCAAA 29350 Query 154544 ATAATTGTAA 154553 |||||||||| Sbjct 29351 ATAATTGTAA 29360 >seq9576 Length=1569244 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||| | || || |||| || || ||||| || || |||||||| Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| ||||| ||||||||| |||| || | ||| || || ||||| Sbjct 195592 AATGTGCGTCCA-TCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGG 195534 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| |||| | |||| | || || | || || | ||||||| Sbjct 195533 AATGCCTTCTTTGTCC-TGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCA 195475 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || ||||| || || || || ||||| || ||||| Sbjct 195474 CCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | ||||| |||||||| ||||| || || | Sbjct 196336 CCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 196277 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | ||| || || || |||||| |||||| ||||| ||||| Sbjct 196276 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGA 196217 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | ||| | || |||| || || || Sbjct 196216 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196157 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || ||||| ||||| ||||||||||| ||||||||| || Sbjct 196156 TCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCATACCT 196106 >seq9744 Length=475756 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || || || | || ||||| ||||||||||| ||||| Sbjct 179450 CCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGAT 179509 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||| || || | || | ||| || || || ||||| Sbjct 179510 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGA 179569 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| | ||||| | ||| | ||| || | || ||||| Sbjct 179570 ATGCCTTCCTTGTCC-TGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCAC 179628 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| || || ||||| || ||||| Sbjct 179629 CTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495936964210400