Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10162 232 6e-56 >seq10162 Length=1180275 Score = 232 bits (256), Expect = 6e-56 Identities = 591/885 (67%), Gaps = 32/885 (4%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||| || |||| | || ||||||||| || || | | |||||| |||| Sbjct 71280 TAAAAGTCGGCATCCAGTGTAAAAACATTGTCCAAACGATTGGCTGTCACGCCCCATTTT 71339 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||||| ||| | ||||||||| || |||||||| |||| ||| || ||||| Sbjct 71340 TGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCATTTCC 71399 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 || || || |||||| | | | | | ||| || | | | ||| | || | Sbjct 71400 ATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTCAACCAGCAGA 71459 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| |||| ||| |||||||||| |||||||| ||||||||||| || |||| || Sbjct 71460 CGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAAATT- 71518 Query 13764 ACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||| | | || |||| ||||| | ||| || ||||| ||| || || Sbjct 71519 ACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGATTTC 71578 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACACGCAA 13878 ||||| || || | || | | | |||| ||| || || | |||| Sbjct 71579 AATAATACGTTCTTT----GCTGGGTTTCTGCACCAGATATTTGAACATCAGTACGGCAA 71634 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 |||||||||| | ||| || || | || | ||| || || ||||| || || |||| Sbjct 71635 AATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCAGGCA 71694 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | | || ||||| || | |||||| || | ||||| ||| || ||||| |||| Sbjct 71695 TTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATATACCCT 71754 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT-TGTTCGATATCCAT 14057 |||| ||||||||||| || | ||||||||||| || || || | || |||||| Sbjct 71755 CAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGAT-GAAATCCAT 71813 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 ||||| || | || || |||| |||||||||||| ||||| || | | Sbjct 71814 GACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGAAAAGA 71873 Query 14118 TATTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||||| | | || ||| |||||||||||| || || | ||||||||||| | Sbjct 71874 TATTCACGTTGATCGCGGTCCTT--AATGTATGTATCGATCAGAATACTATACATTTCGG 71931 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| | |||||||| || || || || ||||| ||||| | ||||| | | ||| | Sbjct 71932 AGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTTGCA 71991 Query 14236 ---CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 ||| |||| || | ||| | ||||||||||| || ||||||||| || || | Sbjct 71992 CCTCTTGCGAG---AAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGA 72048 Query 14293 AAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCA 14347 |||| ||| || ||| | || || || || |||||||| | | | | | ||| Sbjct 72049 AAAAGGCCAGAACATGAGAT--ATGAA--ATAGC-GTTCATTGTCTGTTAATCTATCCCA 72103 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||| | ||| || || || ||||| ||||| || ||||||||||| Sbjct 72104 ATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479605147655800