Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10162 224 9e-54 >seq10162 Length=1180275 Score = 224 bits (248), Expect = 9e-54 Identities = 588/884 (67%), Gaps = 30/884 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||| || |||| | || ||||||||| || || | | |||||| |||| Sbjct 71280 TAAAAGTCGGCATCCAGTGTAAAAACATTGTCCAAACGATTGGCTGTCACGCCCCATTTT 71339 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 || ||||||| ||| | |||||| || || |||||||| |||| ||| || ||||| Sbjct 71340 TGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCATTTCC 71399 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||| |||||| | | | | | ||| || | | | ||| | | | Sbjct 71400 ATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTCAACCAGCAGA 71459 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | ||| |||| ||| |||||||||| |||||||| ||||||||||| || |||| || Sbjct 71460 CGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAAATT- 71518 Query 13552 ACAGGAATTATATT-AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||| | | || ||||| ||||| | ||| || ||||| || | || || Sbjct 71519 ACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATC---TCGGATGAT 71575 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACACGCAA 13666 | |||||| | || | || | | | |||| ||| || || | |||| Sbjct 71576 TTCAATAATA-CGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTACGGCAA 71634 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||||||||| | ||| || || | || | ||| || || ||||| || || |||| Sbjct 71635 AATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCAGGCA 71694 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | | || ||||| || | |||||| || | || || ||| || ||||| |||| Sbjct 71695 TTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATATACCCT 71754 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 |||| ||||||||||| || | ||||||||||| || || ||| |||||| Sbjct 71755 CAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATGAAATCCATG 71814 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT 13906 ||||| || | || || |||| ||||||||| || |||||||| | || Sbjct 71815 ACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGAAAAGAT 71874 Query 13907 GTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 ||| | | || ||| |||||||||||| || || | ||||||||||| || Sbjct 71875 ATTCACGTTGATCGCGGTCCTT--AATGTATGTATCGATCAGAATACTATACATTTCGGA 71932 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||| | ||||| || || || || || ||||| || || | ||||||| | ||| || Sbjct 71933 GTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTTGCAC 71992 Query 14025 CTC---CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 ||| |||| || | ||| | || |||||||| |||||||||||| || || || Sbjct 71993 CTCTTGCGAG---AAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGAA 72049 Query 14082 AAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAA 14136 ||| ||| || ||| | || || || || |||||||| | | | | | |||| Sbjct 72050 AAAGGCCAGAACATGAGAT--ATGAA--ATAGC-GTTCATTGTCTGTTAATCTATCCCAA 72104 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || | ||| || || || ||||| ||||| || ||||||||||| Sbjct 72105 TCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478466239390680