Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10186 581 4e-161 seq10162 342 7e-89 seq9684 100 4e-16 >seq10186 Length=270785 Score = 581 bits (644), Expect = 4e-161 Identities = 1506/2274 (66%), Gaps = 44/2274 (2%) Strand=Plus/Plus Query 70795 TCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCCTGT 70853 |||| ||||||||||||| | || || |||||| || |||| ||| |||||||| || Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTT-GTTCGTAAATAATACATGCCCGT 27586 Query 70854 TTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGAT 70912 || || || || || ||| || ||||| || || | ||| || | || | Sbjct 27587 CTTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTT 27645 Query 70913 CGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCA 70972 |||||| ||| ||||| | ||| ||||| |||||||||||||| || | || || |||| Sbjct 27646 CGGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCA 27705 Query 70973 TTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCT 71031 |||| ||| | ||||| | ||||||||||| ||||| |||| ||| | | | ||| Sbjct 27706 TTTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGA-TCTCT 27764 Query 71032 TCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATC 71088 | |||| | | |||| || || || |||| | ||| ||| |||| || || Sbjct 27765 TTGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATA 27824 Query 71089 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA 71148 ||||||| ||| || | ||||| ||| | | || | ||| |||| || | | | Sbjct 27825 TCTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTA 27884 Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 ||||| || || | ||| | ||| ||||||||||| || || || || | ||| ||| Sbjct 27885 AATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCA 27944 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC---CAATAGACTA 71265 ||||| |||| ||| || || || || ||||| ||||| ||||| | |||| || | Sbjct 27945 TTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAAT-GAGT- 28002 Query 71266 TTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCG 71323 | | | |||||| | || ||||| | ||||| |||||| ||| | || | Sbjct 28003 -TGCGCACACCATGC--TTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGG 28059 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT---AGCG-TATGATCCT 71379 ||||| || || || || || | || || Sbjct 28060 TGGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTA----CCG 28115 Query 71380 GCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCA 71439 | |||||| || || || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 28116 GGATATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCA 28175 Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT--GCTTCCGGGCTATCAAATG 71497 || ||||| ||||||||||| | || ||| || ||||| || | || ||| | | Sbjct 28176 TAGTAAATTGTTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGG 28233 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 | ||| | ||||| | | ||| || || ||||| || |||||||| || || | | Sbjct 28234 GGTAACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGAT 28293 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 ||||| |||| || || ||||| || | ||||| || || || || || ||||||| Sbjct 28294 GTCTCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTAT 28353 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 ||||||| | | || ||| |||||| ||| | ||| |||||| | || | Sbjct 28354 TGAGATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTT 28413 Query 71678 CTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 || | ||||||| || | || || |||| ||||||||| || | |||| || Sbjct 28414 CTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAG 28473 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | || | | |||||| || || | ||| || || ||||| || || | ||||| Sbjct 28474 GTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTT 28533 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||||||||||||| || || || || || | || ||| | || || || ||||| | Sbjct 28534 GTTGATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCA 28593 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTC 71913 || | ||| || || || ||| | || || | || |||| | | ||| | | Sbjct 28594 CTTGGGCTTCGATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCTATTGGCTTTG 28652 Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 ||| ||||||||| | || | | ||| || ||||||||||| ||| | || Sbjct 28653 CCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGC 28712 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || ||||||| | |||||||| | ||||| || |||| || | || || |||||| Sbjct 28713 CCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATA 28772 Query 72034 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 || ||||| ||||||||||| || || ||| |||||||||| | |||||| || || || Sbjct 28773 AACAGATCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCC 28831 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||| || || || | ||| | ||| | | |||||| |||||||| |||||||| || || Sbjct 28832 TGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGAT 28891 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 ||| | | || || |||||| || || ||||| | || | || || || | Sbjct 28892 GGCAAATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAA 28951 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 || || ||||| || | | ||||||||||| ||||| || |||| ||| | |||| Sbjct 28952 TACCCTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCC 29011 Query 72273 ACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 |||| || || | || |||||| || ||||| || ||| ||| || || | Sbjct 29012 CTTGGCGCGTATACAATGGACATTGAT--GCCAATTCCTCCGGCCGATTTCGATATCATG 29069 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 ||||| ||| | | | | || || || || |||| ||| |||| | || || Sbjct 29070 GCGCACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGG 29129 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 ||||| |||| ||| | || | || | ||| ||||| || |||||||| || Sbjct 29130 AAACAAGACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGA 29189 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 ||||| | ||| || || | ||||| ||||| || || | || || || | Sbjct 29190 GTAAAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCA 29249 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 ||||| || || || |||||||| | ||| || ||||| || || | ||||| ||| Sbjct 29250 TGTATGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTC 29309 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 ||||||||||| || || ||||||| |||||||| |||||||| ||||| || || Sbjct 29310 ATTTTCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCA 29369 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 72690 || || |||| ||| |||||||||| ||| || || | || | || || || Sbjct 29370 CGATCATAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAATG 29428 Query 72691 ATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 72749 | ||| || || || || | || | || ||| | ||| ||| | ||||| Sbjct 29429 AAACTCCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATC 29488 Query 72750 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 72809 ||||| || || | || || |||||||| || ||||| ||||| || || | Sbjct 29489 ACTGATCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACG 29548 Query 72810 GGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGC 72869 ||| || || | |||||||| | ||| | || || ||| || || |||| ||||| Sbjct 29549 GGCTGCCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGC 29608 Query 72870 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 72929 || | | ||||||| | || || || ||| ||| | || | || ||| | | | Sbjct 29609 CAAATTATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGT 29668 Query 72930 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGA 72989 ||| || |||||| | | ||| | || |||||||| || | ||| || ||||| Sbjct 29669 TATGGCAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGA 29728 Query 72990 CGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAA 73043 ||||| || || || || | |||| || |||| ||| ||||| ||||| Sbjct 29729 TGTGATCTTGTCGAAATGTACCTCTTCCTTGCGACCATCTCGCTTAACCACAAA 29782 >seq10162 Length=1180275 Score = 342 bits (378), Expect = 7e-89 Identities = 585/841 (70%), Gaps = 22/841 (3%) Strand=Plus/Plus Query 41768 CCCATTTTTTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 ||||||||| ||||||||||||| ||| ||| || ||||| || || || |||||| Sbjct 71332 CCCATTTTT-GGTATTCACCCAC---TTTGCGTTCAAAGAAATTTGTTTTACCATCCAAT 71387 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || |||||||||| || ||||| | ||| || ||||| || ||||| Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAAT 71447 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 ||| | || | ||| || | ||||| |||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || | ||| ||| ||||| |||| || ||||| |||||||| || || ||| Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 42005 GTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA 42062 || || || ||| ||||| || ||| | || | || ||| ||||||| Sbjct 71568 CGGATGATTTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 42063 AACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGA 42122 || ||||| || |||| || || || | || ||||| ||||| || || | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 42123 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGA 42182 || |||||||| ||||| || ||||||||||| || || ||||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG 42240 | || || || || || ||||| ||||||| | |||||| || || | | | ||| Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATG 71805 Query 42241 TA-TCCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | |||| ||| ||||||||||||||||| || || ||||| ||||| ||| Sbjct 71806 AAATCCA----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATG 71861 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 ||||| || ||||| | || || | || |||| ||||||||||||| || |||| Sbjct 71862 GCATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTA 71921 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || |||| ||||| ||||| || || || || ||||| || | ||| || Sbjct 71922 TACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCT 71981 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || || || || ||| | || |||||| |||||||||| || || || || ||| | Sbjct 71982 GTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAG 72041 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || || ||||| |||| ||||| ||| ||||| ||| | ||||||| ||| | Sbjct 72042 GCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCC 72101 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 |||||| | | ||||| || | ||| |||||||| || ||||||||||| || |||||| Sbjct 72102 CAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCC 72161 Query 42596 T 42596 | Sbjct 72162 T 72162 >seq9684 Length=559441 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 36476 ACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 36535 ||||| ||| || ||||| ||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 346052 ACCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAA 346111 Query 36536 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 36580 ||| | | |||||| ||||||||||| ||||| | ||||| || Sbjct 346112 ATGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670967329640120