Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10186 158 1e-33 seq9576 131 2e-25 seq9744 98.7 1e-15 >seq10186 Length=270785 Score = 158 bits (174), Expect = 1e-33 Identities = 854/1337 (64%), Gaps = 46/1337 (3%) Strand=Plus/Plus Query 156664 CCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCT 156723 ||| ||||| || || ||||| ||||||||| ||| || || | || |||| ||| Sbjct 28043 CCAATCCCACAAGTCGGTGGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCT 28102 Query 156724 CGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGATGCCAGTTCGTAACTGG 156782 | |||||||| | | || ||| || || || | | |||||||| |||||| Sbjct 28103 TACAGGGCTACCGGGATATGTTTCATAGGGACCATCTTTCTCA-GCCAGTTCACAACTGG 28161 Query 156783 CCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAA-TAGAACGGCAGCA 156841 |||| | ||| ||| || | ||||| |||||| | ||| | | | | | | | Sbjct 28162 CCTCCAAGGCACCATAGTAAATTGTTTCGAAAATTTGCTGATTAAGCTTGTAGGCCTGT- 28220 Query 156842 TCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATG 156901 || || | || || |||| || || | | || || |||||||| | ||||| Sbjct 28221 TCACTTTCATAGGGGTAACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATA 28280 Query 156902 CCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTC---AATAGGGTAGAAATTG 156958 || ||||||||||| | |||||| || ||| |||| || | ||| || ||| | ||| Sbjct 28281 CCAATGGGACGATGTCTCATATTGGACTTTCTTGC--TTCCGGCAAT-GGATAGTAGTTG 28337 Query 156959 CGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGA 157018 ||||| |||||||| | | | | ||| ||| ||||| | | |||| | Sbjct 28338 ATGTCAATGATTTTATTGAGATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTG 28397 Query 157019 AAATCAAAAGTATCATT---ATTGATATATTTATTGACGGCAATCGACGCTAGATTACAT 157075 |||||| | || | | | | | | | |||||| |||||| || | |||||| Sbjct 28398 AAATCATACGTCTTTTCTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAA 28457 Query 157076 ACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTT 157135 || ||| |||| || || || | || | || ||||| | |||||||||||||||||| Sbjct 28458 ACTGCAATTTCATCAGGTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTG 28517 Query 157136 ATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTAC 157195 ||| || ||| |||||| || ||||| ||||||||||| ||| | | ||| || Sbjct 28518 ATCGTGCCAATATTTTGTTGATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAA 28577 Query 157196 GGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGC--GGGCA 157253 || || || ||||| |||| ||| |||||| ||| || | ||| | || Sbjct 28578 GGGGTTCCTGTTTCCACTTGGGCTTCGATGATG----GCA--AACCATAGCGCCTGCGCT 28631 Query 157254 TTTGCTCGCGAA----ACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCA 157309 ||| | | | | ||||| | ||||| | || ||| | |||||| || Sbjct 28632 TTTACGGTCCTATTGGCTTTGCCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCG 28691 Query 157310 TCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCG 157369 || || || ||| | ||| ||||| | || |||||||||| ||||| || Sbjct 28692 TCTCCCCACACATCTTGTAGCCCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCA 28751 Query 157370 TTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGC 157429 || ||||| || || |||||||| | |||||||| ||| | |||| | | ||| | Sbjct 28752 TTCTCTTCGACACGCTTCATAAACAGATCGGGAATCCAAAGGGCGTAGAAAAGATCTCTG 28811 Query 157430 GCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCA 157488 || | || ||||| |||| ||||| | | |||| || | ||| || | Sbjct 28812 GC-ACGATGCTCTTCCTTGCCTGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGA 28870 Query 157489 ATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTGATCCAC 157545 |||||| ||||| | || | || || || || || |||||||||||| || Sbjct 28871 ATGCCATGGTTCCAAATAGATGGCAAATGCGCCAGGACGTTTGCCGCCACCTTGATCGAC 28930 Query 157546 GTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTT 157605 | ||| | | ||| || || || | | ||| || | | || ||| ||||| || Sbjct 28931 ATAACGTGCAACATTGTTGAATACCCTTAACATGGGCACTAAACCATTGGATGTGCCATT 28990 Query 157606 CGTAGATTTTATTTTGCTGTTGC--GGCCGCGTACGCTGTTCACGTTCAATCCAATACCG 157663 || | | | | ||| | | |||||| | | || || | ||||| || Sbjct 28991 AGT-GCCGGCA-ATAGAAGTTCCCTTGGCGCGTATACAATGGACATTGATGCCAATTCCT 29048 Query 157664 CCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAA-TGTGTTATAGATGCCGCGAATGCT 157722 ||| | ||| || ||||||||||| | ||| || | || | || || ||| Sbjct 29049 CCGGCCGATTTCGATATCATGGCGCACT-GTTCAACAGACTTGAAAATACCTTCAATCGA 29107 Query 157723 ATCGCTTTCCATGGTCAATAGAAAACATGAACTCATCT-GCGGAGTCAGACTGCCGGCAG 157781 ||| ||||||||| || ||||| || || || | |||| | || | |||| Sbjct 29108 ATCAGCCACCATGGTCAGGAGGAAACAAGACGACAGCTGGGGGAGATTG-GTGGCAGCAG 29166 Query 157782 CGAACATGGTTGGGCTTGCGTGCGTGTACATTTTTCTGCTCAAA--AATTTATAGGATTT 157839 | || | ||||| || | | ||| | | | | ||| || || || | | Sbjct 29167 CAAATAGAGTTGGAGAAGCAT--GAGTAAAGTAACGTTCCGAAAGCAAGTTGTAAGTCTC 29224 Query 157840 TATGGCACTATCAATGTCGTCTCCAAAGATTCCTAAAGCTATACGCATGTGCATATGTTG 157899 |||||| ||||||||| || ||| || || | ||| | ||||||| |||| ||||| Sbjct 29225 GATGGCAGCATCAATGTCTTCACCATGTATGCCCACAGCCACACGCATGAGCATGTGTTG 29284 Query 157900 AATCCTTTCGGCAACCTTTTCATTAATTTTTATCAAATA--ACCATTTTTTAGAGTTTGA 157957 | ||| || |||| |||| |||| ||||| | |||||| ||| ||| | |||| | Sbjct 29285 AGGCCTCTCCGCAATCTTTCCATTCATTTTCAACAAATACGACC--TTTCCAATGTTTTA 29342 Query 157958 TATCCAAAGTAATTGTA 157974 ||||||| |||||||| Sbjct 29343 AATCCAAAATAATTGTA 29359 >seq9576 Length=1569244 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | ||| ||||| | ||||||||| || || ||||| || ||| Sbjct 196793 GCCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 196734 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| || | |||||| |||||| | |||| |||||| ||||| ||||| Sbjct 196733 AAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGG 196674 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| || | | ||| | ||||| | |||||||| Sbjct 196673 AATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTAC 196614 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | || ||||| |||| || |||||||| ||||||||| || Sbjct 196613 TTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCATACCT 196562 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || ||||| | ||||||||||| || ||||| || || | Sbjct 196108 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196049 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | || || || || |||||| ||||| ||||| ||||| Sbjct 196048 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGA 195989 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | ||||| ||| Sbjct 195988 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACT 195929 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| ||||| || |||||||| ||||||||| Sbjct 195928 TCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCATA 195881 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | ||||||||||| || |||||||| || | Sbjct 195880 CCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 195821 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | || || || || |||||| ||| || ||||| ||||| Sbjct 195820 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGA 195761 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | ||||| ||| Sbjct 195760 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACT 195701 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||| || ||||||||||| || || || |||||| || Sbjct 195700 TCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCATACCT 195650 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | |||||||||||||| |||||||| || | Sbjct 196336 CCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 196277 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | || || || || |||||| |||||| ||||| ||||| Sbjct 196276 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGA 196217 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | ||| | || || | ||||| ||| Sbjct 196216 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196157 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || ||||| ||||| ||||||||||| ||||||||| || Sbjct 196156 TCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCATACCT 196106 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || ||| | || ||||||| ||| |||||||| || || || ||||| Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| || || ||||||||| |||| || | ||| || || ||||| Sbjct 195592 AATGTGCGTCCA-TCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGG 195534 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| |||||| ||| | | ||| | || || | || || || Sbjct 195533 AATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || || || || ||||| || ||||| Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || ||||| | ||||||||||| || ||||| || || | Sbjct 196564 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196505 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | || || || || |||||| ||| |||||||| ||||| Sbjct 196504 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 196445 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | ||| | || || | ||||| ||| Sbjct 196444 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196385 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| |||| || |||||||| ||||||||| Sbjct 196384 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCATA 196337 >seq9744 Length=475756 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || ||||| | || || || ||||| ||||||||||| Sbjct 179450 CCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGAT 179509 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||| || || | || | ||| || || || ||||| Sbjct 179510 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGA 179569 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| |||||| ||||| | ||| | || |||| ||||| || Sbjct 179570 ATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACC 179629 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 179630 TCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || ||||| || || || ||||||||| Sbjct 178766 CCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGAT 178825 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||| ||||| | |||| ||| ||||| || || || Sbjct 178826 AAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178885 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||| || | | ||| | || || | || || ||| Sbjct 178886 ATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACT 178945 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||||||||| ||||| |||||||| Sbjct 178946 TCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506884559949840