Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq10162 179 5e-40 seq10186 159 5e-34 seq10820 96.9 5e-15 >seq10162 Length=1180275 Score = 179 bits (198), Expect = 5e-40 Identities = 541/825 (66%), Gaps = 34/825 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||| || |||||||| || ||||| || ||||| ||||| ||| | |||| Sbjct 72162 AGGCAGAGGCTTCATTTTGGACAGTGGAAGAAGTTGATCTCTCCAAAGACTTAACTGATT 72103 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 |||| | | || || || | ||| || | || ||||| || || ||||||| || | Sbjct 72102 GGGATA---GATTAACAGACAATGAACGCTATTTCATATCTCATGTTCTGGCCTTTTTCG 72046 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| ||| ||||| || ||||| || ||| | ||||| ||| ||||| |||||| || Sbjct 72045 CCGCCTCTGATGGTATTGTCAATGAAAATTTAGTTGA-ACGTTTCTCGCAAGAGGTGCAA 71987 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | |||| | ||||| || || |||||||| || || || || ||||| ||| Sbjct 71986 GTGACAGAAGCCCGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTTCACTCCGAA 71927 Query 125277 ATGTACTCTACACTGATTGACATGTACATT------CGCGATCCGCAACGTAAACACATG 125330 ||||| || ||||| || | |||||| ||||||| ||||| || | Sbjct 71926 ATGTATAGTATTCTGATCGATACATACATTAAGGACCGCGATC---AACGTGAATAT--- 71873 Query 125331 CTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAAAAGGCTCAATGGGTGATTCG 125389 || || || || || || || |||| | | || | || ||||| | |||| | Sbjct 71872 CTTTTCAATGCCATTGAAACAATGCCAGCCGTTAAG-AAGAAGGCCGATTGGGCCTTGTC 71814 Query 125390 GTGGATCG-ATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 ||||| || | || | || | | || | | | || || || ||||| | Sbjct 71813 ATGGATTTCATCA-GAATCGGCTAATTTTGGAGAACGTGTTATTGCGTTTGCTGCCGTTG 71755 Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 |||| || || || ||||||||||| ||||||||||||| ||||| || || || | Sbjct 71754 AGGGTATATTTTTCAGCGGTAGTTTTGCCTCCATCTTTTGGCTTAAGAAACGTGGTCTAA 71695 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACT 125568 |||| || |||| | || || || || || || ||||| ||| | || ||||| | Sbjct 71694 TGCCTGGCTTGACATTCTCCAATGAATTGATCTCGCGTGACGAAGGCTTGCATTGTGATT 71635 Query 125569 TTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG--ATCCAGCGATGAAAA 125626 ||||| | || |||| ||| |||||| |||||| | ||||| | ||| Sbjct 71634 TTGCCGTACTGATGTT---CAAATATCTG--------GTGCAGAAACCCAGCAAAGAACG 71586 Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 | || | || | ||||| || | || ||||| || || ||||| ||| | || Sbjct 71585 TATTATTGAAATCATCCGAGATGCTGTAAAAATTGAACAGGAATTCCTAACTGAAGCTCT 71526 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || | | ||||| ||||| || | |||||| || || || || ||||| || Sbjct 71525 GCCATGTAATTTAATTGGAATGAATTGTGAATTAATGTCGGAATATATTGAATTTGTTGC 71466 Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 |||||||| ||| || ||| || |||| || ||||| |||| ||||| || Sbjct 71465 CGATCGTCTGCTGGTTGAATTGGATGTTGGCAAAATCTACAATACCAAAAATCCTTTCCC 71406 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGA 125851 |||||| | || ||| | || ||||| || || || || || Sbjct 71405 CTTCATGGAAATGATTTCATTGGATGGTAAAACAAATTTCTTTGA 71361 >seq10186 Length=270785 Score = 159 bits (176), Expect = 5e-34 Identities = 951/1493 (64%), Gaps = 66/1493 (4%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 || || |||| ||| ||| ||||||| ||| | || | | ||| |||||| ||| Sbjct 28993 ACTAATGGCACATCCAATGGTTTAGTGCCCATGTTAAGGGTATTCAA--CAATGTTGCAC 28936 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || || ||| ||||| || ||||| | ||| |||| |||||||| | Sbjct 28935 GTTATGTCGATCAAGGTGGCGGCAAACGTCCTGGCGCATTTGCCATCTATTTGGAACCAT 28876 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| |||| ||||||| ||| | || | |||||| | ||| |||||| | Sbjct 28875 GGCATTCGGATATTTTTGAGTTTTTGGATTTAAAGAAAAACACAGGCAAGGAAGAGCATC 28816 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||||| || | || || || || ||| | || ||| |||| |||||||| ||| | | Sbjct 28815 GTGCCAGAGATCTTTTCTACGCCCTTTGGATTCCCGATCTGTTTATGAAGCGTGTCGAAG 28756 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | |||| ||||| |||||||| || || | || || || ||| |||| Sbjct 28755 AGAATGGCGACTGGTCGCTAATGTGTCCACACAAATGTCCGGGGCTACAAGATGTGTGGG 28696 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCC--TACGAGCAAGAGGGCCGATACGTGAGACG 97162 | || || ||||| || | ||| ||||| | || ||| | | || Sbjct 28695 GAGACGAATTTGAAA--AACTTTACGAAAAATACGAAAAGGAAGGCAAAGCCAATAGGAC 28638 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || | || | | || ||| |||||| | || || || || || ||||| || Sbjct 28637 CGTAAAAGCGCAGGCGCTATGGTTTGCCATCATCGAAGCCCAAGTGGAAACAGGAACCCC 28578 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 || || || | ||| || | |||||||| || || |||| | | ||||| || Sbjct 28577 TTATATGCTGTTCAAAGACGCTTGCAATCGCAAGAGTAATCAACAAAATATTGGCACGAT 28518 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 ||| || |||| |||| || |||||||| |||||| | | || || || | ||||| Sbjct 28517 CAAATGCAGCAATTTGTGTACAGAAATTGTTGAGTACTCGGCACCTGATGAAATTGCAGT 28458 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG---GTAAAGT-GTTTAATC 97398 ||| | |||| ||| | ||| | |||||| || | |||| || | || Sbjct 28457 TTGTAATTTGGCCTCGATTTGTCTCAATATGTTTGT-GACTCCAGAAAAGACGTATGATT 28399 Query 97399 TCAACCTATTGGCAAAGACGGTGCGTC----TGGTGACTAGGAATCTAAACAAGATTATC 97454 |||| |||| |||| ||| | | | || || | ||||| || || || || Sbjct 28398 TCAAGAAATTG---AAGAATGTG-GCCAAGGTTGTTACGCGCAATCTCAATAAAATCATT 28343 Query 97455 GACAATGCACT-CTATCCCATTCCCTCGGCTGCCA---AGTCAAACTTTAAGCACCGACC 97510 |||| | ||| |||||| ||| || || || | |||| || | | || || || Sbjct 28342 GACA-TCAACTACTATCC-ATTGCC--GGAAGCAAGAAAGTCCAATATGAGACATCGTCC 28287 Query 97511 CATCGGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTACGA 97570 ||| ||||| || || ||||| | ||| ||| | || ||||| || |||| || Sbjct 28286 CATTGGTATTGGTGTACAAGGTTTCGCTGACACCCTAATTCTGATGCGTTACCCCTATGA 28227 Query 97571 ----GGACTCGA-TGCA-GTTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACT 97624 | || | | || | | |||| | ||||||||||| || ||| ||| || | Sbjct 28226 AAGTGAACAGGCCTACAAGCTTAATCAGCAAATTTTCGAAACAATTTACTATGGTGCCTT 28167 Query 97625 GACGGAGAGTTGCCAACTGGCC-AGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCC 97683 | || ||||| ||||||| ||| | | || ||| ||| | || | |||||||| Sbjct 28166 GGAGGCCAGTTGTGAACTGGCTGAGAAAG-ATGGTCCCTATGAAACATATCCCGGTAGCC 28108 Query 97684 CGACCAGTCGTGGAGAGTTGCACTTC-GACCGATACTCGG-------TGCACAGCCAAAA 97735 | || | || | |||| | |||| || | | || | | Sbjct 28107 CTGTAAGC-----AAAGGTATTCTTCAGTATGATATGTGGAATAAAGTACCCACCGACTT 28053 Query 97736 GTGTGACTGGTCATCGTTGCGCAAAGAC----ATTGCTCGGTACGGTTTGAGAAACTCTT 97791 ||| || ||| | | | |||| | ||||| | | ||| || | ||||| | Sbjct 28052 GTGGGATTGGGC----TGACCTAAAGGCCAAAATTGCCAAGCATGGTGTGCGCAACTCAT 27997 Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851 |||| | ||||| ||||| || ||| | || |||| | | || ||| |||||| | Sbjct 27996 TGCTCTTAGCACCAATGCCTACTGCTTCTACAGCCCAGATTATGGGTAATAATGAATCAT 27937 Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCA-ATTG 97910 |||| || | ||| || || || ||| | || | || || || ||| | |||| Sbjct 27936 TTGAGCCCTACACATCGAATATTTACACACGTCGTGTACTCTCAGGTGAATTTAATATTG 27877 Query 97911 ACCAACGTGCACTTGGTTCGAGACTTGGAACGG-CTCAATCTGTGGAACGATGACATGGC 97969 | | | || ||| | | || || || || || || ||||| | || || ||| Sbjct 27876 TCAATCAC-CATTTGCT-CAAGGATTTGACCGAACTTGATTTGTGGGATGAAGATATGAA 27819 Query 97970 CCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATT-ACCATCATCCCGGAAGAGT 98028 | |||||| | | | ||| || || ||||| ||| | || |||| ||||| Sbjct 27818 GAATAAGATCATTTCTAGCCGTGGCTCTATACAAAATATTGAACAGATTCCCA-AAGAGA 27760 Query 98029 TGCGCAGAA-TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCT 98087 | || ||| | ||||| || || ||||| ||| | |||||| ||| | ||||| Sbjct 27759 TCCG-AGAGCTTTACAAAACCGTTTGGGAAATTTCCGTCAAGACAACCATCAAAATGGCC 27701 Query 98088 GCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCC 98147 ||||| | || | || ||| || |||||||||||||| ||| | |||| ||||| ||| Sbjct 27700 GCCGATCGTGGGGCCTTCATCGATCAGAGTCAATCGTTTAATATACACGTAGCCGAACCC 27641 Query 98148 ACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGC 98207 | ||| | ||||||| ||||| || || | ||||| ||||||||||||||| Sbjct 27640 AATTACGGAAAATTGACTTCCATACATTTCTATTCCTGGAAGGCTGGCCTCAAGACGGGC 27581 Query 98208 ATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||||| ||| | |||||||| | || |||||||||| | ||||||||||| Sbjct 27580 ATGTATTATTTACGAACAAAGCCTGCGGCCAATGCCATTCAGTTTACGGTGGA 27528 >seq10820 Length=150301 Score = 96.9 bits (106), Expect = 5e-15 Identities = 317/489 (65%), Gaps = 8/489 (2%) Strand=Plus/Plus Query 70001 CACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGA 70060 ||||| ||| || ||||||| ||| |||| ||| ||| ||||| || || | Sbjct 111729 CACATCTGGGATGGTAACAGTACTCGCGAATTTTTAGATAAGCTTGGCTTTACAGATCGT 111788 Query 70061 CAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTAT 70120 |||||||||||||||| || || || |||||||| ||| | || | || | || ||| Sbjct 111789 AAAGAGGGCGATCTGGGTCCGGTATATGGATTCCAATGGCGTCATTTTGGTGCAAAATAT 111848 Query 70121 GTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGA 70179 || || || ||| | | |||| | || ||| ||||| | | || | Sbjct 111849 CGCACTTGTGACGATGATTATACCAATGAGGGAATAGACCAACTTGCAAATG-TAATCCA 111907 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGG---ATCGTAATGTGCTCATGGAATCCTGC 70236 ||| | || |||| ||||| || || ||||| | | ||||| ||| Sbjct 111908 CACAATACGCACAGATCCC---GATAGCAGACGCATTATAATGACCGCTTGGAACCCTAG 111964 Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA 70296 ||| | || |||||| |||||||| || || ||| ||||||| ||||| | | Sbjct 111965 CGATATACATTTAATGGCTCTACCACCATGCCATTGTATGGCTCAATTTTATGTGGCAAA 112024 Query 70297 TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 || ||||||| || || || | ||||| || ||||| || || || || || Sbjct 112025 TGATGAATTGTCCTGTCAGCTGACCCAACGTAGTGCTGATATGGGACTGGGCGTTCCATT 112084 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 || || || || || |||| || | |||||||| ||||| || || || ||| | Sbjct 112085 CAATATCGCCTCTTACGCTTTGTTAACTTATATGATTGCCCACATAACAGGTCTTAAACC 112144 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 ||| || | ||| | | || || | || || |||||||||||| | || ||||| Sbjct 112145 AGGCGATTTTATTCACTCATTGGGTGATACACATGTCTATTTAAATCACGTTGAACCATT 112204 Query 70477 AAAGGTGCA 70485 ||||| ||| Sbjct 112205 AAAGGAGCA 112213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740869424002120