Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9744 145 6e-30 seq9576 129 4e-25 seq10951 100 2e-16 >seq9744 Length=475756 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| ||||| | || || || ||||| || ||||||||| || | | | || Sbjct 178552 TAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATC 178611 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||||||||||||||||||| | |||||||| || ||||| ||||| ||||| || || Sbjct 178612 TTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATC 178671 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| ||| |||| |||||||| | ||||| || |||||||| || Sbjct 178672 TTGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGT 178731 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||| ||| || || ||||||||||| Sbjct 178732 TTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 143 bits (158), Expect = 2e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || ||||| || ||||||||| | | | | ||||||||||| Sbjct 177536 ATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCATCTTCTAATTG 177595 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||||||| |||||||| ||||| ||||| || || ||||| Sbjct 177596 TTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATTTT 177655 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| ||||||||||||| || || || |||||||| ||||||||||| Sbjct 177656 GGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCTGT 177715 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||| || || ||||||||||| Sbjct 177716 CAAAGTCTTGACGAAAATTTGCAT 177739 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || || ||||| || |||||||| || | | | ||||| Sbjct 179239 AACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTC 179298 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||||||||||| | |||||||| || ||||| ||||| ||||| || || Sbjct 179299 TAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTG 179358 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| ||| ||||||||||||| ||||| || |||||||| ||||| Sbjct 179359 GATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTT 179418 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||| || || ||||||||||| Sbjct 179419 ACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 || ||| ||||| | || || || ||||| || ||||||||| || | | | || Sbjct 179008 TAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATC 179067 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||||| |||||||||||| | |||||||| || ||||| |||||||||||||| || Sbjct 179068 TTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATC 179127 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| ||| ||||||||||||| || || || || || ||||| Sbjct 179128 CTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGT 179187 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| ||| || || ||||||||||| Sbjct 179188 CTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || || || ||||||||| || | | | |||||| Sbjct 178784 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178843 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||||||| || ||||| ||||| ||||| || || Sbjct 178844 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178903 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| ||||||||||||| || || || || || ||||| || Sbjct 178904 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 178963 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| || ||||||||||| Sbjct 178964 CCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || || || ||||||||||| || | | | |||||| Sbjct 178100 ACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGATAAGGTACGACCATCTTCT 178159 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | |||||||| || ||||| ||||||||||| || || Sbjct 178160 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGG 178219 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || ||||| | || || || || || ||||| || Sbjct 178220 ATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCACTTCCAAAGTGATGGTCTTT 178279 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || || ||||||||||| Sbjct 178280 CCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || ||||| ||||||||||| || | | | ||||| Sbjct 179468 ACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCC 179527 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | || ||||| |||||||| ||||| ||||| ||||| | Sbjct 179528 AATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 179587 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| |||||| |||| || ||||| | ||| || || || ||||| || || Sbjct 179588 ATTTTAGCT-TTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTT 179646 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| || || || || || ||||| || Sbjct 179647 GCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 95.1 bits (104), Expect = 9e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||| |||||||||||| | |||||||| || ||||| ||||| ||||| || Sbjct 178382 TCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTA 178441 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || ||| ||| ||| ||||||||||||| || || || || || ||| Sbjct 178442 TCTTGGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATG 178501 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||| ||| || || ||||||||||| Sbjct 178502 GTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 >seq9576 Length=1569244 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || ||||| || ||| || | | |||| || Sbjct 196775 AACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTC 196716 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||||||||| | |||||||||||||| || ||||| ||||| ||||| Sbjct 196715 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTG 196656 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| || |||| ||||| || | |||||| || || || |||||||| Sbjct 196655 AATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTT 196596 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| || ||||||||| Sbjct 196595 GCCAGTCAGGGTCTTTACGAAGATTTGCATA 196565 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || ||||| | || || |||||||| |||||||| || | ||| || | | Sbjct 196321 AAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG--ACAATGTACGACCAT 196264 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || || ||||| ||| | |||||||||||||| || ||||| ||||| |||| Sbjct 196263 CTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGT 196204 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | || ||| ||| || |||| || |||||| | ||| || || ||||| || | Sbjct 196203 CCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAG 196144 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| || |||| |||||||| |||||||||||| Sbjct 196143 TTTTGCCAGTCAAGGTTTTTACGAAAATTTGCATA 196109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/235 (70%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || |||||||| || || ||||| || || || ||||| | | ||| || | |||| Sbjct 195634 ACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATC--TGATAATGTGCGTCCATCTT 195577 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | | || || ||||| | || | | ||||||||| ||||| ||||||||||| Sbjct 195576 CAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCCT 195517 Query 15273 AAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || || |||| || ||||| | || || || |||||||||||| Sbjct 195516 GAATTTTAGCT-TTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTT 195458 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT-----TGAAAATAAAATTTT 15381 || || || | ||| || || || || ||||| || |||||||| | |||| Sbjct 195457 TTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGTTTCTGAAAATATATTTTT 195403 >seq10951 Length=171266 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | |||||| || ||||| |||||||| ||| | | | | ||||| Sbjct 139796 ACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 139855 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||||||||| || || || ||||| ||||| Sbjct 139856 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGG 139915 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| ||||| ||| | || || || || || ||||| ||| Sbjct 139916 ATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTA 139975 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || || || || || || || ||||| ||| Sbjct 139976 CCGGTGAGGGTCTTGACGAAGATCTGCATTTTT 140008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362088769173267