Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9744 91.5 1e-13 seq9576 87.8 1e-12 seq7037 86.0 5e-12 >seq9744 Length=475756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | | || |||| ||||| || ||||||||||||||||||||||| | Sbjct 178536 TTCCTCCACGGAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGG 178595 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || | | || || | ||||| || || |||| | | |||||| || || Sbjct 178596 ATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 178655 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || || || ||||| || || | | | ||||| |||||| Sbjct 178656 GAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTA 178715 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | |||||| ||||||||||| ||||| || || |||||||||||| Sbjct 178716 CTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTAACGAAAATTTGCATT 178765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || ||||||||||||||||||||||| | | || | | || || Sbjct 179240 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCT 179299 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||||| || || |||| | | |||||| || ||| | || || || || Sbjct 179300 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 179359 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | ||||| ||||| ||| | |||||| |||||| Sbjct 179360 ATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTTA 179419 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| ||||| ||||| |||||||||||| Sbjct 179420 CCTGTCAAAGTCTTGACGAAAATTTGCATT 179449 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || ||||||||||||||||||||||| | | || | || || Sbjct 179012 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCT 179071 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || |||| | | |||||| || ||| | || ||||| || Sbjct 179072 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGG 179131 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | ||||| |||||| ||| | || ||||| || Sbjct 179132 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 179191 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || ||||| ||||| |||||||||||| Sbjct 179192 CCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 >seq9576 Length=1569244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAGCTGTTT 18900 || || || || || ||||| ||||| | | ||| |||||| || ||||| || Sbjct 195622 GTTGATTCTTTCTGGATATTATAATCTGATAATGT----GCGTCCATCTTCAAGCTGCTT 195567 Query 18901 ACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTG 18960 ||| ||| | || ||||| || || || || | ||| |||||||| |||||| Sbjct 195566 ACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGAATTTTAGC 195507 Query 18961 TTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAA 19020 ||| || | | | |||||| ||||||| || | |||||||||||| || ||||| Sbjct 195506 TTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTTTTGCCAGTTAA 195447 Query 19021 AGTTTTGACAAAAATTTGCATTTT 19044 ||| || || || || |||||||| Sbjct 195446 AGTCTTCACGAAGATCTGCATTTT 195423 >seq7037 Length=35088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || || | | |||| ||||| ||||||||||| |||||||| ||||| | | Sbjct 22913 CCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGAC 22972 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | | || |||| ||||| || ||| |||| | || || |||||| || Sbjct 22973 AATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGA 23032 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||| || ||| || | ||| ||| || ||||| Sbjct 23033 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACC 23092 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| || || || || || | || || ||||| || ||||| || Sbjct 23093 TCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCATCTT 23142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469287260878