Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq7037 113 3e-20 seq9576 105 4e-18 seq9744 95.1 8e-15 seq10951 86.0 4e-12 >seq7037 Length=35088 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || | ||| |||| ||||||||||| || ||||| || || ||||| ||||||| Sbjct 22911 CACCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAG 22970 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 |||| | | || |||||||| ||||| ||| ||||| ||||| || |||| | Sbjct 22971 ACAATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTG 23030 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || || ||||| || |||| ||| || ||| || ||||| || | || Sbjct 23031 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAA 23090 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || ||||| || || |||||||| || || || || || ||||| || Sbjct 23091 CCTCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCATCTT 23142 >seq9576 Length=1569244 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || || |||||||| || ||||| |||||||| | | Sbjct 196324 CGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCA 196265 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || || || |||||||| || || | || || ||||| || Sbjct 196264 TCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 196205 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| || ||| |||| ||| |||| || Sbjct 196204 TCCTGGATCTTGGCC---TTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTG 196148 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | |||||||||||||||||||| Sbjct 196147 ATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || || ||||| || || || || |||||||| | | Sbjct 196552 CGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCA 196493 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || || || ||||| ||||| || | || || ||||| || Sbjct 196492 TCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTG 196433 Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || | ||| || || ||| ||| || ||| |||| ||| |||| || Sbjct 196432 TCTTGAATTTTAGCC---TTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 196376 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || |||||||| |||||||| Sbjct 196375 ATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || || ||||| || || ||||| |||||||| | | Sbjct 195868 CGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCA 195809 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || || || ||||| || || || | || || ||||| || Sbjct 195808 TCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTG 195749 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| || |||||| |||| ||| |||| || || Sbjct 195748 TCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATG 195689 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || | ||||| || ||||| ||||| Sbjct 195688 GTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || || ||||| || || || || |||||||| | | Sbjct 196096 CGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCA 196037 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| || || || || ||||| || || | || || ||||| || Sbjct 196036 TCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCTTCCTTG 195977 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| || |||||| |||| ||| |||| || || Sbjct 195976 TCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATA 195917 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | || |||||||| |||||||| Sbjct 195916 GTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||||| || | |||||||| | ||| || ||||| || ||||| ||||| || Sbjct 195653 ACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGA 195594 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || || || || | ||||| ||| ||| |||| | ||| ||||| | || Sbjct 195593 TAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGG 195534 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 ||||||||||| || ||| ||| || ||| ||| || || || | || Sbjct 195533 AATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| || || ||||| || || | ||| || ||||| || ||||| || Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 >seq9744 Length=475756 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| ||||||||||| || || || | || || Sbjct 178556 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178615 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || ||| || || ||||| |||||||| | ||| || ||||| || || | Sbjct 178616 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178675 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| || || || | || |||| || || ||| Sbjct 178676 ATTTTGGCC---TTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTT 178732 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||| || |||||||||||||| Sbjct 178733 TTACCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| |||||||||||||| || || | || || Sbjct 179240 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCT 179299 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || ||| || || ||||| |||||||| | ||| || ||||| || || | Sbjct 179300 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 179359 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || || || | || |||| || || ||| Sbjct 179360 ATTTTTGCC---TTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTT 179416 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | ||| || |||||||||||||| Sbjct 179417 TTACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||||||||| || ||||| ||||| || ||||||||||| || | | Sbjct 179462 CGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCA 179521 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| ||||| || |||||||| || ||||| | || |||||||| || Sbjct 179522 TCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTG 179581 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || || |||| || |||| || || Sbjct 179582 TCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATT 179641 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || | || || ||||| || ||||| || Sbjct 179642 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| ||||| ||||| ||||| | | || || Sbjct 178328 ACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGACAACGTACGACCATCTTCT 178387 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | || || ||| || || ||||| |||||||| | ||| || ||||| || || | Sbjct 178388 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGG 178447 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || || ||| | || |||| ||| || || Sbjct 178448 ATCTTGGCC---TTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTC 178504 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||| || |||||||||||||| Sbjct 178505 TTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||| || || || || || ||||||||||| || || || | || || Sbjct 178784 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178843 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| |||||| || || ||||| |||||||| | ||| || ||||| || || | Sbjct 178844 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178903 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || || || | || |||| ||| || || Sbjct 178904 ATTTTGGCC---TTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTC 178960 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| |||||||||||||| Sbjct 178961 TTTCCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| ||||||||||| || || | | || || Sbjct 179012 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCT 179071 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | || || ||| || || ||||| |||||||| | ||| || |||||||| || | Sbjct 179072 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGG 179131 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || || || || | || |||| ||| || || Sbjct 179132 ATTTTGGCC---TTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTC 179188 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||| || |||||||||||||| Sbjct 179189 TTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| || || || ||||||||||| || | | || || Sbjct 178100 ACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGATAAGGTACGACCATCTTCT 178159 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | || || ||| || || ||||| |||||||| | ||| || ||||| || || | Sbjct 178160 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGG 178219 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| || || || | || |||| ||| || || Sbjct 178220 ATTTTGGCC---TTGACATTTTCAATTGTATCCGAAGGCTCCACTTCCAAAGTGATGGTC 178276 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||| || |||||||||||||| Sbjct 178277 TTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 >seq10951 Length=171266 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || || || ||||| || ||||| || ||||| || | || ||| Sbjct 139796 ACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 139855 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || || || || |||||||| || || | ||| || ||||| || || | Sbjct 139856 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGG 139915 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | || |||| ||| || || Sbjct 139916 ATCTTAGCC---TTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTC 139972 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATG 33376 || || || || || || ||||| || ||||| ||| || Sbjct 139973 TTACCGGTGAGGGTCTTGACGAAGATCTGCATTTTTCTG 140011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318698005915326