Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9744 125 5e-24 seq9576 114 9e-21 seq7037 93.3 3e-14 >seq9744 Length=475756 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| ||||||||||| |||||| ||| || |||| || Sbjct 178556 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178615 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| || |||||||| | || | |||||| |||||| Sbjct 178616 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178675 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| ||||||| ||||| || || | ||||| |||||| Sbjct 178676 ATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTA 178735 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 178736 CCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| ||||||||||| ||||| ||| || |||| || Sbjct 179240 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCT 179299 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| || |||||||| | || | |||||| |||||| Sbjct 179300 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 179359 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| ||||| | | | ||||||| ||||| || || | ||||| |||||| Sbjct 179360 ATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTTA 179419 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 179420 CCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| |||||||| || ||||| ||| ||| |||| ||| Sbjct 179468 ACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCC 179527 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| || || || || || || ||||| |||| | ||||| || || | Sbjct 179528 AATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 179587 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| ||||| | || ||||| || | |||||||| || Sbjct 179588 ATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTTG 179647 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || |||||||| || || ||||| Sbjct 179648 CCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 |||||| || || ||||||||||| |||||| || || |||| || ||||| Sbjct 177536 ATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCATCTTCTAATTG 177595 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| || || || ||||| || || ||||| | || | |||||| ||||| ||||| Sbjct 177596 TTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATTTT 177655 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| | | | ||||||| ||||| || || | ||||| |||||||| || Sbjct 177656 GGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCTGT 177715 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || |||||||| Sbjct 177716 CAAAGTCTTGACGAAAATTTGCAT 177739 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || || || |||||||| |||||| ||| || |||| || Sbjct 178784 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178843 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| || || ||||| || |||||||| | || | |||||| |||||| Sbjct 178844 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178903 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | | | ||||||| |||||||| || | || || || || Sbjct 178904 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 178963 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || || || |||||||| Sbjct 178964 CCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| ||||||||||| |||||| ||| ||| |||| || Sbjct 179012 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCT 179071 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||| || || || ||||| || |||||||| | || | ||||||||||| Sbjct 179072 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGG 179131 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | | | ||||||| |||||||| || | || || || || Sbjct 179132 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 179191 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 179192 CCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| ||||| ||||||||||| || ||| |||| || Sbjct 178328 ACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGACAACGTACGACCATCTTCT 178387 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||| || || || ||||| || |||||||| | || | |||||| |||||| Sbjct 178388 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGG 178447 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || || || | | | ||||||| |||||||| || | || || || || Sbjct 178448 ATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTCTTT 178507 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || || |||||||| Sbjct 178508 CCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 >seq9576 Length=1569244 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | | | |||||||| || || ||||| || ||||||||||| Sbjct 195653 ACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGA 195594 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| || |||| || | || || || ||||| || | | ||| ||||| |||| Sbjct 195593 TAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGG 195534 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| || |||||| ||| || | ||| |||||||| |||||||| Sbjct 195533 AATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || |||||||||||||| || || ||||| Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 >seq7037 Length=35088 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| || |||||||||||||| ||| || |||| ||| Sbjct 22931 ACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCTTCC 22990 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| ||||| || || ||||| || ||| | || | || ||||| || | Sbjct 22991 AATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGA 23050 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| | | | ||| || | ||||| || || | || || || || Sbjct 23051 ATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGTCTTG 23110 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | ||||| |||||||| ||||| Sbjct 23111 CCCGTAAGGGTCTTAACAAATATCTGCAT 23139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354689017244076