Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq9576 100 2e-16 seq9744 95.1 1e-14 >seq9576 Length=1569244 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | |||||||||||||| |||||||| || || || | ||| Sbjct 196322 CAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCATC 196263 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| || ||||| || | || | | |||||||| || | ||||| ||||| Sbjct 196262 TTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTC 196203 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || || || | ||| || |||| |||||| ||||| ||| || || Sbjct 196202 CTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAGT 196143 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||| ||||| ||||| || ||||||||||| Sbjct 196142 TTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | ||||||||||| || |||||||| || || || | ||| Sbjct 195866 CAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATC 195807 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| || ||||| || | || | | ||||||||| || | ||||| ||||| Sbjct 195806 TTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTC 195747 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 |||||| ||| || | | | || ||| |||||| ||||| || ||||| Sbjct 195746 TTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGT 195687 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| ||||| |||||||| ||||| Sbjct 195686 CTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || | | |||||||| ||||| |||||||| || || || ||||| Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTG-- 195595 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | | |||||| | || || || ||| | || || || ||||| || | Sbjct 195594 ATAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAG 195535 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| |||||| ||| || | ||| || ||| ||| ||| Sbjct 195534 GAATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCA 195475 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| ||||||||||||||| || || || || || || || |||||||| Sbjct 195474 CCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| |||||||| | ||||||||||| || ||||| || || | Sbjct 196108 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196049 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGG 20100 | || | ||||||||| || ||||| || | || |||| | |||||||| || Sbjct 196048 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGT-TGTTGATCTGGAGG 195990 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||| ||||| |||||| ||| || | | | || ||| |||||| Sbjct 195989 AATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAAC 195930 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||| || |||||||| ||||| || || || || |||||||| Sbjct 195929 TTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| |||||||| | ||||||||||| || ||||| || || | Sbjct 196564 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196505 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||||||||| || ||||| || | || | | ||| ||||| || Sbjct 196504 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 196445 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| |||||| || || | ||| || |||| |||||| | Sbjct 196444 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196385 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||||||||| |||| || || || || |||||||| Sbjct 196384 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 >seq9744 Length=475756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || || ||||| ||||||||||| | || | ||||||| Sbjct 179468 ACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCC 179527 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| | | |||||| || || | |||||| ||||| | Sbjct 179528 AATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 179587 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| | ||| ||||||| |||| ||||| || ||| Sbjct 179588 ATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTTG 179647 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||||||| || || || || || |||||||| Sbjct 179648 CCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419482435238847