Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10162 205 8e-48 >seq10162 Length=1180275 Score = 205 bits (226), Expect = 8e-48 Identities = 555/835 (66%), Gaps = 16/835 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||| | ||| | |||||| || |||||||| || || || ||||| | Sbjct 71336 TTTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCAT 71395 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTT--TTACACCCTAATTCTAGT 12976 |||||| || |||||||||||| | | ||| ||||| ||| || ||||| | Sbjct 71396 TTCCATGAAGGGGAAAGGATTTTTGGTATTGTAG-ATTTTGCCAACATCC-AATTCAACC 71453 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | || | || |||||||| || || || | |||||| ||||| |||||||| ||| Sbjct 71454 AGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATT 71513 Query 13037 AATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 || ||||| |||| |||||| |||| || | | ||| || | || || || | Sbjct 71514 AA-ATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGAT 71572 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATTTG--ATAGATGCTTAAACATCA-TACA 13152 || || || |||||||| | ||| | | || |||| || ||||||| ||| Sbjct 71573 GATTTC-AATAATACGTTCTTTGCTGG-GTTTCTGCACCAGATATTTGAACATCAGTAC- 71629 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||||||||| ||||| ||||| || | || | || || || ||||| | || Sbjct 71630 GGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCC 71689 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| || || ||||| |||| |||||| || | ||||| ||| |||||||| Sbjct 71690 AGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATAT 71749 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTCT 13330 || ||||| || |||||||| || | | ||| ||| | || | ||| | | Sbjct 71750 ACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGA--TGAA 71807 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 ||||| |||||| | || || | |||||| ||| |||| || || || Sbjct 71808 ATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTG 71867 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || | ||| | || | | ||| ||| || ||||| |||| | ||||||||| Sbjct 71868 AAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATT 71927 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || || |||| ||||||||| || |||||||| ||||| || || | || |||| || Sbjct 71928 TCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACT 71987 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 || || || | || | ||| |||| ||||| || || || || ||| || || Sbjct 71988 TGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCG 72047 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCT 13630 ||||| || || | || || || | ||| || |||| || | |||||| Sbjct 72048 AAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCA 72107 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | || ||||| || | ||| || || || || |||||||| ||||| | |||| Sbjct 72108 GTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430874790024774