Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7037 185 2e-41 seq9576 172 1e-37 seq9744 159 8e-34 seq10951 127 5e-24 >seq7037 Length=35088 Score = 185 bits (204), Expect = 2e-41 Identities = 171/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || ||||| || |||||||||||||| ||||| | |||| || ||| Sbjct 22928 AGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCT 22987 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||||||| |||||||||| | |||||||| || || ||||| ||||| ||| Sbjct 22988 TCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCC 23047 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| |||||||| | || || || || |||||||| || |||||| Sbjct 23048 TGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGTC 23107 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || || ||||| || || |||||||||||||| |||| Sbjct 23108 TTGCCCGTAAGGGTCTTAACAAATATCTGCATCTTGT 23144 >seq9576 Length=1569244 Score = 172 bits (190), Expect = 1e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| || | ||| | ||| ||||||||||| |||||||| || Sbjct 195655 ATACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCT 195596 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| || || || |||||||| ||||| || ||||| || ||| Sbjct 195595 GATAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGA 195536 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| |||||||| || ||||| || ||||| | ||||| ||| || Sbjct 195535 GGAATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCC 195476 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| | ||||| || || ||||| | || || || || ||||||||||||| Sbjct 195475 ACCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGT 195421 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| || |||||||||||||| || || |||||||| | || | ||| ||||| Sbjct 195863 TACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTC 195804 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | || || || || || || | | ||||||||| ||||| || ||||| || || || Sbjct 195803 CAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTG 195744 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| || ||||| | || ||| |||||| || || | ||| || ||||| Sbjct 195743 AATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCTT 195684 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | |||||| ||||| |||||||| Sbjct 195683 TCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||||||| ||||| || |||||||| || || || | ||||| Sbjct 196778 AAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTC 196719 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | |||||| ||||||||||| | | |||||||| ||||| || ||||| || || Sbjct 196718 CTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTC 196659 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || || || || ||||| | ||| || ||||||||| || | ||| || || Sbjct 196658 TTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGT 196599 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| || || ||||| Sbjct 196598 TTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || |||||||||||||| || ||||||||||| | || | ||| ||||| | || Sbjct 196541 ATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTG 196482 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || || || || | | ||| ||||| ||||| || ||||| || || ||||| || Sbjct 196481 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTT 196422 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || ||||| | |||||| |||||| || || | ||| || || || ||||| Sbjct 196421 AGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTTTTGCCAGT 196362 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || ||||| Sbjct 196361 CAGGGTCTTTACGAAGATTTGCAT 196338 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || |||||||||||||| || ||||||||||| | || | ||| ||||| | || Sbjct 196085 ATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTG 196026 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || || || || | | |||||||| ||||| || ||||| || || ||||| || Sbjct 196025 CTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTT 195966 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || ||||| | || ||| |||||| || || | || ||||| || ||||| Sbjct 195965 AGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGT 195906 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || || ||||| Sbjct 195905 CAAGGTCTTTACGAAGATTTGCAT 195882 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || ||||||||||| || || || |||||||| | || | ||| ||||| | || Sbjct 196313 ATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTG 196254 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || || || || || | | |||||||| ||||| || ||||| || ||||| ||||| Sbjct 196253 CTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTT 196194 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || ||||| | |||||| |||||| || || | || ||||| || ||||| Sbjct 196193 GGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGT 196134 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| || || ||||| Sbjct 196133 CAAGGTTTTTACGAAAATTTGCAT 196110 >seq9744 Length=475756 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| || || || || || ||||| || || ||| Sbjct 179447 ATTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCA 179506 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| ||||| | ||||||||| || ||||||| | |||||| || ||| Sbjct 179507 GATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGA 179566 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||||||| || |||||||||||||| | ||||| |||||| Sbjct 179567 GGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCC 179626 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | |||||| ||||| || || | || || || || ||||||||||| Sbjct 179627 ACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| | || ||||| ||||||||||| || || Sbjct 178763 ATTCCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCG 178822 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||||| |||||||||||| ||||| | | ||| || || || Sbjct 178823 GATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGG 178882 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || || || |||||||||| |||||| || || Sbjct 178883 GGAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCC 178942 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| ||||| | |||||| || || || |||||| Sbjct 178943 ACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATT 178993 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| || || || || || |||||||| || || Sbjct 178991 ATTCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCG 179050 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| |||||||| ||||| ||||| ||||| | | ||| || || || Sbjct 179051 GATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGG 179110 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| || || || || |||||||||| |||||| || || Sbjct 179111 GGAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCC 179170 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| ||||| | || || || || || |||||| Sbjct 179171 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 >seq10951 Length=171266 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| || || ||||| || || || || ||||| || | || | ||| ||| Sbjct 139793 AGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 139852 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || || || || | | |||||||| || || || ||||| || || Sbjct 139853 TCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCT 139912 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | ||| ||| ||| || ||||| | || || ||| Sbjct 139913 TGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTC 139972 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || || || || ||||||||||| Sbjct 139973 TTACCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151096169793796