Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq11241 105 6e-18 >seq11241 Length=117455 Score = 105 bits (116), Expect = 6e-18 Identities = 196/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || ||||| || || | ||| || || | || || ||||| | || | || | Sbjct 50967 CCCGTTGAACCAAAACCTGCGTCACCTCGTTTAGTTTCTTCCAATTTATCGACTTGTTCA 51026 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | |||| |||||||||| ||||||| || || || || ||||| ||||| Sbjct 51027 AGCCCGGGGTAGAATATGCGTTCACATATTAATTGTGCAATTCTATCTCCACGTTTAACT 51086 Query 5360 TCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||| ||| | || || || || || ||||| || | ||||| || || |||| Sbjct 51087 TCAAATTCG--GCATCGGAGTGATTGAATAGTACCACACCAAGGTTGCCGCGATAATCTT 51144 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||||| || |||||||| || |||||||| | || || || | ||||||||||| | Sbjct 51145 CGTCGACTACCCCAGCGCCGACATCGATAAAATTCTTAACTGCTAATCCGGAACGTGGAG 51204 Query 5478 CTATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523 | ||||| || || ||||| ||| | | || |||| ||||| Sbjct 51205 CAATGCGACCATAAGAACCATTTGGAACTTCGATTTGAAGATCAGT 51250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447635736719440