Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9744 86.0 5e-12 seq10951 84.2 2e-11 seq9576 82.4 6e-11 >seq9744 Length=475756 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||||||||| || || | || |||| || || ||| || | Sbjct 179485 CTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAA 179544 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 |||||||||||| || || || | | |||||||||| |||||| || | | Sbjct 179545 AATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATT 179604 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||| | || ||| ||| | ||| || || || ||||| | || ||||| Sbjct 179605 TTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCAC 179664 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 179665 GAAGATCTGCAT 179676 >seq10951 Length=171266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||| | ||| |||||||| |||||||| || | ||| || | || ||| Sbjct 139796 ACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 139855 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || |||||| || | || ||||| || ||||| || | || ||||||||| Sbjct 139856 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGG 139915 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | ||||| |||| || ||| ||| | || ||||| ||| Sbjct 139916 ATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTA 139975 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || |||||||| Sbjct 139976 CCGGTGAGGGTCTTGACGAAGATCTGCAT 140004 >seq9576 Length=1569244 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | || || ||||| | || || || || ||||| || |||| Sbjct 196565 ACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGA 196506 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || |||| |||||| ||| || | || |||||||||||||| || Sbjct 196505 CAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 196446 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| |||||| ||||| | || ||||||| || || Sbjct 196445 AATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAAC 196386 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| |||||||| || || || || || || || || ||||| Sbjct 196385 TTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421146019762487