Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9828 129 7e-25 >seq9828 Length=397621 Score = 129 bits (142), Expect = 7e-25 Identities = 224/323 (69%), Gaps = 12/323 (4%) Strand=Plus/Minus Query 164785 CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAAT 164844 || ||| | ||||| ||||||||| | | ||||| |||||||| ||| ||||| || Sbjct 147180 CACGATACTGTGGTAAATCAGTTGTTGGCCAAAATCGATGGTGTCGAACAATTAAACAAC 147121 Query 164845 ATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCT 164904 ||| | | | ||||||||||| || | ||| | |||||||| ||||| |||| || Sbjct 147120 ATTCTTGTCATTGGTATGACCAATCGTCGCGATATGATTGATGAAGCTTTGCTACGTCCC 147061 Query 164905 GGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATT 164964 ||||| || ||| | |||| ||||| | |||||| | || | || || ||||||| Sbjct 147060 GGTCGTTTGGAAGTTCAAATGGAAATCAGCTTACCCAATGAACAGGGTCGTTGTCAAATT 147001 Query 164965 TTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGAT----ATATTAT--CTCCCGATGTA 165018 || | |||| ||| | | | ||||| ||| || | ||||||||| Sbjct 147000 TTGAGTATTCA----CACCAAACGTATGC--GTGATTTCAATAAAATTGCACCCGATGTA 146947 Query 165019 GATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTA 165078 |||| || || | ||||| | ||||| |||| |||||||| ||||| || || || Sbjct 146946 GATTGCAAAGAACTGGCTGCGGCCACTAAGAATTTCAGTGGTGCCGAATTGGAAGGTTTG 146887 Query 165079 GTAAGAGCCGCTCAATCAACCGC 165101 || | ||||||||||| || || Sbjct 146886 GTGCGTGCCGCTCAATCGACGGC 146864 Score = 125 bits (138), Expect = 9e-24 Identities = 219/313 (70%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||| | |||||||| | ||||| | ||| |||||| | ||| ||| Sbjct 147749 ATTGGGATTTCGGTAAAATGGGAATTGGTGGTTTGGATAAGGAATTTAATGCTATATTCC 147690 Query 164453 GACGAGCATTTGCTTCTAG-ATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 | ||||||||||| || | ||| |||| ||||| || || |||| ||||| || Sbjct 147689 GTCGAGCATTTGCATCGCGTGTCA-TTCCACCAGAAATTATTGAACAATTGGGCTGCAAG 147631 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 || | || || ||| || | |||| ||||||||| |||||||| || |||||||| Sbjct 147630 CACGTCAAGGGTATTCTACTCTATGGTCCTCCTGGTACTGGTAAAACTTTGATGGCTCGG 147571 Query 164572 TGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTA 164628 |||| | || | |||||| || || || || ||||| ||||||||| | | Sbjct 147570 CAAATTGGT-AAAATGTTAAATGCACGAGAACC--CAAGATTGTCAATGGTCCTCAGATT 147514 Query 164629 TTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAA 164688 ||| | |||||||| ||||| || || || ||| || | |||||| ||||| ||| Sbjct 147513 TTGGATAAATATGTGGGTGAATCCGAGGCCAATATTCGTCGTTTGTTTGCCGAGGCCGAA 147454 Query 164689 GAAGAACAAAAGA 164701 ||||| |||||| Sbjct 147453 GAAGAGGAAAAGA 147441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595719404629200