Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9576 143 2e-29 seq7037 131 2e-25 seq10951 111 1e-19 seq9744 96.9 3e-15 >seq9576 Length=1569244 Score = 143 bits (158), Expect = 2e-29 Identities = 183/249 (73%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||||| | || ||||| ||||| |||||||||||||| | Sbjct 196128 TTTTTACGAAAATTTGCATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTT 196069 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 | || | |||||| || || ||| || ||| |||| ||| || ||| | ||||| Sbjct 196068 TCTGGATGTTATAGTCAGACAA--TGTACGACCATCTTCCAACTGCTTGCCGGCGAAGAT 196011 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 || | ||| |||||||||||||||||||| ||||| | |||||| || |||||| | Sbjct 196010 CAAGCGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTC 195951 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || |||||| | | || || || | ||||| ||||| ||||| | || || || || Sbjct 195950 GATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAA 195891 Query 94999 GATCTGCAT 95007 ||| ||||| Sbjct 195890 GATTTGCAT 195882 Score = 143 bits (158), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || ||||| ||||| |||||||||||||| || || | ||||| Sbjct 196572 TTTGCATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTAT 196513 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || || ||| || ||| |||| ||| || ||| | ||||| || | ||||| Sbjct 196512 AGTCAGACAA--TGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTG 196455 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||||||||||||| ||||| | |||||| ||||||||| | | ||| || | Sbjct 196454 ATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGA 196395 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||||||||| ||||| || || || || ||||| ||||| Sbjct 196394 AGGTTCAACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 138 bits (152), Expect = 1e-27 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||| |||||||||||||| || || | ||| || || || ||| || Sbjct 195868 CGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAA--TGTACGAC 195811 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||| || ||| | ||||| || | || |||||||||||||||||||| | Sbjct 195810 CATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCT 195751 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | |||||| || |||||| ||| |||||| | | || || || | |||| Sbjct 195750 TGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGA 195691 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| | ||||| ||||| |||||||| Sbjct 195690 TGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||||||||| || | |||||| ||| | ||| |||||| Sbjct 196774 ACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCC 196715 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || |||| || || | ||| |||||||||||||||||||| ||||| | | Sbjct 196714 AATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGA 196655 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| ||| ||||||| | || || || | ||||||||||| Sbjct 196654 ATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTTG 196595 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||| ||||| Sbjct 196594 CCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 125 bits (138), Expect = 6e-24 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || |||||||| | || | ||||| || | || ||||| || || | Sbjct 195665 AAAAATCTGCATACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGAT 195606 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | ||| ||| | ||| || ||||| || || ||||||||| |||| Sbjct 195605 ATTATAATC--TGATAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTT 195548 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||||||||| ||||||||||| | |||||| || || ||| | | ||| Sbjct 195547 TGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTA 195488 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || |||||||| ||||| | ||| ||||| ||||||||| Sbjct 195487 TCTGAAGGCTCCACCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGC 195428 Query 95006 AT 95007 || Sbjct 195427 AT 195426 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| ||||| |||||||||||||| ||||| | ||| || || || ||| || Sbjct 196324 CGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAA--TGTACGAC 196267 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||| || ||| | ||||| || | ||| |||||||||||||||||||| | Sbjct 196266 CATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCT 196207 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||||||| | | ||| || | | || || || | |||| Sbjct 196206 TGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGA 196147 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | ||||| || || || ||||| Sbjct 196146 TAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 >seq7037 Length=35088 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||| ||||||||||| ||||| || | |||||||| | Sbjct 22913 CCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGAC 22972 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||| ||||||||| |||| ||||||| ||| ||||| || ||| Sbjct 22973 AATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGA 23032 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||| || || ||||| ||| |||||||| | || || Sbjct 23033 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACC 23092 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || ||||| || || ||||| |||||||| Sbjct 23093 TCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCAT 23139 >seq10951 Length=171266 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||||||||| | ||| || ||| || ||| ||| ||| Sbjct 139796 ACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 139855 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| ||| | ||||| || | ||| |||||||| || |||||||| ||||| | Sbjct 139856 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGG 139915 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | ||||| | | ||||| || | |||||||| || Sbjct 139916 ATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTA 139975 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 139976 CCGGTGAGGGTCTTGACGAAGATCTGCAT 140004 >seq9744 Length=475756 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | | |||| ||||| |||||||| || |||||||| | | Sbjct 179438 AAAATTTGCATTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATG 179497 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| ||| || || ||| |||| ||||||||| | || ||||| | | Sbjct 179498 TTGTAATCAG--ATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCT 179555 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||||||||| ||||| ||||| | |||||| || || || | | || | Sbjct 179556 GTTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTAT 179615 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || || | || || || || || || | || ||||| |||||||||| Sbjct 179616 CCGAAGGTTCCACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCA 179675 Query 95007 T 95007 | Sbjct 179676 T 179676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||| | | || | ||||| |||||||| || |||||||| | Sbjct 178298 AAAATTTGCATTCCTCCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATA 178357 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || ||| || |||||||| || | || || || | ||| Sbjct 178358 TTATAATCCGACAACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGC 178417 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||||||||| || || | || || ||||| || | | || || Sbjct 178418 TGGTCAGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTAACATTTTCTATGGTATCT 178477 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | |||||||| |||||||| | ||| || || || || ||||| Sbjct 178478 GAGGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||| ||| |||||||| || | || |||||| | ||| | ||| || Sbjct 178784 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178843 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||| | || || || | ||||| ||||| ||||||||||| || || | Sbjct 178844 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178903 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | || || | | || || || | |||||||| ||| Sbjct 178904 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 178963 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| || || || ||||| Sbjct 178964 CCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448176398227320