Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11462 187 4e-43 seq6259 178 2e-40 seq14571 111 2e-20 seq9612 104 4e-18 >seq11462 Length=102054 Score = 187 bits (206), Expect = 4e-43 Identities = 202/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| | | | || || |||||||||||||| || |||||||||||||| Sbjct 76607 CGCTAAACGTCAGAGGAAAGTGCTCCGTGATAACATCCAAGGTATTACCAAGCCAGCTAT 76666 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| ||||||||||||| || || || ||| ||||||| || | || ||||| | Sbjct 76667 TAGACGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCTGGCCTGATTTACGAAGAAAC 76726 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| ||||| | || | | |||||| | ||||||| || ||| ||||| Sbjct 76727 TCGTGGTGTTCTGAAGGTGTTTTGGGAAAACGTTATTCGTGATGCTGTCACCTACACCGA 76786 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| ||||| || |||||| | |||||| |||| ||||| ||||| | ||||| Sbjct 76787 ACATGCTAAGCGTAAAACCGTCACCGCTATGGATGTCGTATATGCTTTGAAGAGGCAAGG 76846 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| || ||||| Sbjct 76847 CCGTACATTGTACGGTTTCGGCGGTTAA 76874 Score = 168 bits (186), Expect = 1e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || | |||||||||||| || |||||||||||||| | || ||||||||||||| Sbjct 6438 CTCCGTGGTAACATCCAAGGTATTACCAAGCCAGCTATTAGATGTTTGGCTCGTCGTGGA 6497 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| ||||||| || | || ||||| | ||||| |||| ||||||| ||| Sbjct 6498 GGTGTAAAACGTATCTCTGGCCTGATTTACGAAGAAACTCGTGGTGTTCTGAAGATGTTC 6557 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | |||||| | ||||||| || ||| ||||| || ||||| ||||| || ||| Sbjct 6558 TTGGAAAACGTTATTCGTGATGCTGTCACCTACACCGAACATGCTAAGCGTAAAACCGTC 6617 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | |||||| |||| ||||| || || | ||||| Sbjct 6618 ACCGCTATGGATGTCGTTTATGCTTTTAAGAGACAAGG 6655 Score = 167 bits (184), Expect = 4e-37 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| | | | || || |||||||||||||| || |||||||||||||| Sbjct 99092 CGCTAAACGTCACAGGAAAGTGCTCCGTGATAACATCCAAGGCATTACCAAGCCAGCTAT 99151 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| ||||||||||||| || || || ||| ||||||| || | || ||||| | Sbjct 99152 TAGACGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCTGGCCTGATTTACGAAGAAAC 99211 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| ||||| | || | | | |||||| | ||||||| || |||| ||||| Sbjct 99212 TCGTGGTGTTCTGAAGGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCAACTACACCGA 99271 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 || ||||| ||||| || |||||| | ||||||||| Sbjct 99272 ACATGCTAAGCGTAAAACCGTCACCGCTATGGATATC 99308 Score = 143 bits (158), Expect = 4e-30 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16484 CCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTAT 16543 |||||||| | ||| ||||||||||||| || || || ||| ||||||| || | || Sbjct 15185 CCAGCTATTAGACGTTTGGCTCGTCGTGGCGGTGTAAAACGTATCTCTGGCCTGATTTAC 15244 Query 16544 GAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCAC 16603 ||||| | ||||| |||| ||||| | || | | | |||||| | ||||||| || | Sbjct 15245 GAAGAAACTCGTGGTGTTCTGAAGGTGTTTTTGGAAAACGTTATTCGTGATGCTGTCACC 15304 Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 || ||||| || ||||| ||||| || |||||| | |||||| || | ||||| ||||| Sbjct 15305 TACACCGAACATGCTAAGCGTAAAACCGTCACCGCTATGGATGTCATATATGCTTTGAAG 15364 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | |||||||||| | || ||||| || Sbjct 15365 AGACAAGGCCGTACCTTGTACGGTTTCGG 15393 Score = 131 bits (144), Expect = 3e-26 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 ||||| || |||||||||||||| | ||| || |||||||||| || || || ||| || Sbjct 94265 CAAGGTATTACCAAGCCAGCTATTAGACGTTTGACTCGTCGTGGCGGTGTAAAACGTATC 94324 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 ||||| || | || ||||| | ||||| |||| ||||| | || | | | |||||| Sbjct 94325 TCTGGCCTGATTTACGAAGAAACTCGTGGTGTTCTGAAGGTGTTTTTGGAAAACGTTATT 94384 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 | ||||||| || ||| ||||| || ||||| ||||| || |||||| | |||||| Sbjct 94385 CGTGATGCTGTCACCTACACCGAACATGCTAAGCGTAAAACCGTCACCGCTATGGAT 94441 Score = 109 bits (120), Expect = 9e-20 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||||| || |||||||||||||| | || ||||||||||||| || Sbjct 28143 CGTGATAACATCCAAGATATTACCAAGCCAGCTATTAGAGGTTTGGCTCGTCGTGGCGGT 28202 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| ||||||| || || ||||| | ||||| |||| ||||| | || | Sbjct 28203 GTAAAACGTATCTCTGGCCTGACTTACGAAGAAACTCGTGGTGTTCTGAAGGTGTTTTTG 28262 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | | |||||| | ||||||| || ||| ||||| || Sbjct 28263 GAAAACGTTATTCGTGATGCTGTCACCTACACCGAACA 28300 >seq6259 Length=39553 Score = 178 bits (196), Expect = 2e-40 Identities = 187/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || |||||||||||||| | ||| ||||||||||||| Sbjct 10745 CTCCGTGATAACATCCAAGGTATTACCAAGCCAGCTATTAGACGTTTGGCTCGTCGTGGC 10804 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| ||||||| || | || ||||| | ||||| |||| ||||| | || Sbjct 10805 GGTGTAAAACGTATCTCTGGCCTGATTTACGAAGAAACTCGTGGTGTTCTGAAGGTGTTT 10864 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | |||||| | ||||||| || ||| ||||| || ||||| ||||| || ||| Sbjct 10865 TTGGAAAACGTTATTCGTGATGCTGTCACCTACACCGAACATGCTAAGCGTAAAACCGTC 10924 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| ||| ||||| ||||| | |||||||| | | || ||||| || Sbjct 10925 ACCGCTATGGATGTCGCATATGCTTTGAAGAGACAAGGCCGAACCTTGTACGGTTTCGGC 10984 Query 16694 AGTTAA 16699 ||||| Sbjct 10985 GGTTAA 10990 Score = 145 bits (160), Expect = 1e-30 Identities = 183/252 (73%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| || |||||||||||| | | | |||||||||||||| Sbjct 37697 CTCCGTGACAACATCCAAGGTATTACCAAGCCAGCTGTTAGATCTTTGGCTCGTCGTGGT 37756 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT- 16572 || || || ||| ||||||| || | || ||||| | ||||| |||| ||||| | || Sbjct 37757 GGTGTAAAACGTATCTCTGGCCTGATTTACGAAGAAACTCGTGGTGTTCTGAAGGTGTTT 37816 Query 16573 -----CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | | || |||| | ||||||| || ||| ||||| || ||||| ||||| Sbjct 37817 TTGGAAATGATGATTATTATTCGTGATGCTGTCACCTACACCGAACATGCTAAGCGTAAA 37876 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || |||||| | || ||| |||| |||| ||||| | |||||||||| | || ||| Sbjct 37877 ACCGTCACCGCTATAGATGTCGTATATGTTTTGAAGAGACAAGGCCGTACCTTGTACGGT 37936 Query 16688 TTTGGAAGTTAA 16699 || || ||||| Sbjct 37937 TTCGGCGGTTAA 37948 >seq14571 Length=9108 Score = 111 bits (122), Expect = 2e-20 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| | | | || || |||||||||||||| || |||||||||||||| Sbjct 3268 CGCTAAACGTCACAGGAAAGTGCTCCGTGATAACATCCAAGGTATTACCAAGCCAGCTAT 3209 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||| ||||||||||||| || || || ||| ||||||| || | || ||||| | Sbjct 3208 TAGACGTTTGGCTCGTCGTGGCGGGGTAAAACGTATCTCTGGCCTGATTTACGAAGAAAC 3149 Query 16552 TCGTGATGTTTTGAAG 16567 ||||| |||| ||||| Sbjct 3148 TCGTGGTGTTCTGAAG 3133 >seq9612 Length=662870 Score = 104 bits (114), Expect = 4e-18 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| ||||| |||||||| || ||||| |||||||| Sbjct 462987 GCCAAGCGTCATCGTAAGGTACTTCGTGATAATATCCAAGGTATAACCAAACCAGCTATT 463046 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || ||||| || || || ||| | ||||| ||| | || ||||||| | Sbjct 463047 CGTCGTTTGGCACGCCGTGGAGGTGTTAAACGTATATCTGGCTTGATATACGAAGAGACT 463106 Query 16553 CGTGATGTTTTGAAG 16567 || | ||| || ||| Sbjct 463107 CGAGGTGTATTAAAG 463121 Score = 100 bits (110), Expect = 4e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||| || | ||||||| || ||| ||||| ||||| |||||||| ||||| || | || Sbjct 463253 CGTCATTCGTGATGCTGTCACCTACACCGAACACGCCAAACGTAAAACTGTAACGGCTAT 463312 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||||||||||||||| ||||| |||| | || |||||||| ||||| Sbjct 463313 GGATGTGGTCTATGCATTGAAACGCCAAGGTCGTACTTTGTACGGTTTTGGTGGTTAA 463370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056468592491