Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9715 134 2e-26 >seq9715 Length=515860 Score = 134 bits (148), Expect = 2e-26 Identities = 318/476 (67%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 193888 TGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTG 193947 |||| || |||||||| | |||||||||||| ||||| | || || || Sbjct 219034 TGTACGGCTATTGGATAGTTGTCAATTATCGTGAGGCATATAACATGTTTGCCTGTAATG 218975 Query 193948 GTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTA 194007 |||||||||| ||||||||||| || || ||||||| | ||||| || ||||| |||| Sbjct 218974 GTATTCTCTTTAATCACGAATCACCGCGACGAGGTGAAAACTTTGTTACACGTAAAATTA 218915 Query 194008 CACAAGGTTTATCTAAGATCTCTGT---TGGATTACAGAAGATTCTTTATCTTGGTAATC 194064 | | | | | | ||||||| | | | ||| ||| ||| || | | || ||| Sbjct 218914 CCCGATCTGTTGCCAAGATCTATCTCAATCAATT--GGAATATT-TTGAATTGGGCAATT 218858 Query 194065 TTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGT 194124 | || | || | |||||||| || || | ||| ||||| ||||| |||||| | ||| Sbjct 218857 TAGATTCGAAACGTGATTGGGGTCATGCCATGGACTATGTGGAAGCAATGTGGATGATGC 218798 Query 194125 TGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAG 194184 | |||| ||| |||| |||||||| || || || |||||| | |||||||| Sbjct 218797 TACAACGTGATACACCCTCCGATTATGTTATCGCCACCGGTGAAACACACAGTGTTAGAG 218738 Query 194185 ACTTTGTGAATGAAGCAGC---ACCCTATTTTGGTTTTAAACTAGAATGGATGGGTGAAG 194241 | ||||| ||| || || | |||| |||| | || | | ||| ||| |||| Sbjct 218737 AATTTGT---TGAGGCCGCTTTTCGCTATATTGGACGTCAAATTGTGTGGCAGGGAGAAG 218681 Query 194242 GTGAAGACGAGATTGCTCTCGATTGGAATACTaaaaaaaCAATCATCGGAATCAACCCTA 194301 ||| | |||| |||| | || | ||| | | | | ||||||| || | Sbjct 218680 GTGTAAACGAAATTGGAATTGAACAGGATAGCGGCATAGTACGGGTGCGAATCAATCCCA 218621 Query 194302 GATACTTCAGACCTGCAGAAGTGGATTCATTATTAGGTGATGCTACAAAAGCAAAA 194357 ||| ||| | || | ||||| |||| | | || ||||||||| ||||||| ||| Sbjct 218620 AATATTTCCGTCCCACCGAAGTCGATTTACTTTTGGGTGATGCTTCAAAAGCGAAA 218565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807348395207720