Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10162 205 1e-47 >seq10162 Length=1180275 Score = 205 bits (226), Expect = 1e-47 Identities = 544/825 (66%), Gaps = 15/825 (2%) Strand=Plus/Plus Query 21179 CCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGAT 21238 ||||||||| | || |||| ||| | ||| || |||||||| || || |||||||| Sbjct 71332 CCCATTTTTGG-TATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAA 71390 Query 21239 ATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCT 21298 || |||||| || || ||||||| | || | ||||| | | ||| ||| Sbjct 71391 ATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTCA 71450 Query 21299 GATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCG 21358 | | | ||| || |||||||| ||||||| ||||||||||||||||||| || Sbjct 71451 ACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCA 71510 Query 21359 ATCAATTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAAC 21417 || || || ||| || ||||||| || | || | ||| || || || || Sbjct 71511 ATTAAATT-ACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCG 71569 Query 21418 AATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACA 21477 || || | || || | | | || || | || | | ||| ||||||| Sbjct 71570 GATGATTTCAATAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTAC 71629 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||||||||| ||||| || | || |||||||| || ||||| || || Sbjct 71630 GGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCC 71689 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAA 21595 ||||||| || | || || | |||||| || || ||||| | | ||||||| | Sbjct 71690 AGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA--AT 71747 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG---ATTCTTTATCC 21652 || ||||||||||||||||| |||| | ||||| || | ||| ||||| || Sbjct 71748 ATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTG-ATGA 71806 Query 21653 AATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGC 21711 ||| |||| ||||| | ||||| ||||| | | || |||| ||||| || Sbjct 71807 AAT--CCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCA-TTGTTTCAATGGC 71863 Query 21712 TTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATA 21771 || ||||||| | || ||| || | ||| |||||| Sbjct 71864 ATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATA 71923 Query 21772 CATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGA 21831 |||||| || || | |||||| || || || || || || || || || | || |||| Sbjct 71924 CATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGT 71983 Query 21832 ACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 ||| ||||| | || |||| | | || |||||||| || || |||||| ||| Sbjct 71984 CACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGC 72043 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCA 21951 ||| ||||| |||| | || ||| ||||| ||||| || ||||||||| | | ||| Sbjct 72044 GGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCA 72103 Query 21952 ATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||| ||| ||||| || | ||| |||||||| ||||||||| Sbjct 72104 ATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531764586853880