Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10186 572 2e-158 seq10162 360 2e-94 seq9684 104 3e-17 >seq10186 Length=270785 Score = 572 bits (634), Expect = 2e-158 Identities = 1501/2271 (66%), Gaps = 38/2271 (2%) Strand=Plus/Plus Query 61989 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 62048 |||| || || ||||||| | || || || || || |||| ||| ||||| ||||| Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTC 27587 Query 62049 TTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62107 || || || || || ||| || ||||| || || | ||| ||| | || || Sbjct 27588 TTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTC 27646 Query 62108 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62167 |||| || ||||| | |||||||| |||||||||||||| || | || || ||||| Sbjct 27647 GGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCAT 27706 Query 62168 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTT 62226 ||| ||| | ||||| | ||||||||||| ||||| |||| ||| | | | |||| Sbjct 27707 TTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGA-TCTCTT 27765 Query 62227 CTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCT 62283 |||| | | |||| || || || |||| | || ||| ||||||| || | Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 62284 CATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAA 62343 | |||| ||| || | ||||| ||| | | || | ||| |||| || | | || Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 62344 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCAT 62403 |||| || || | ||| | || ||||||||||| || || || || | || |||| Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 62404 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 62463 |||| |||| ||| || || || || ||||| ||||| ||||| | | || || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 62464 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62521 | ||| ||| | | ||||| | ||||| |||||| ||| | || | || Sbjct 28006 GCACACC--ATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGG 28063 Query 62522 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTAC----AT 62577 ||| || |||||||| || || ||| |||| || Sbjct 28064 TACTTTATTCCACATATCATACTGAAGAATACCTTTGCT----TACAGGGCTACCGGGAT 28119 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 |||| || || || || || |||||||| ||||||||||| ||||| || ||||| || | Sbjct 28120 ATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGT 28179 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGATA 62695 |||| |||||||| || | || ||| || ||||| || | || ||| | || || Sbjct 28180 AAATTGTTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGGGGTA 28237 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755 | | ||||| | | ||| || || ||||| ||||||||||| || || | |||||| Sbjct 28238 ACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCT 28297 Query 62756 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815 | |||| || || ||||| || | ||||| || || || || || ||||||||||| Sbjct 28298 CATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAG 28357 Query 62816 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA- 62874 ||| | || || ||| |||||| ||||| ||| |||||| | | ||| Sbjct 28358 ATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTTCTGG 28417 Query 62875 --TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932 | |||||||| || | || || |||| ||||||||| || | |||| || | Sbjct 28418 AGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGC 28477 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 || || | | || || || || | ||| || || ||||| || || | ||||||||| Sbjct 28478 CGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTG 28537 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 ||||||||| || || || || || | || || | || || || ||||| | || Sbjct 28538 ATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTG 28597 Query 63053 AGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111 | ||| || || || ||| | || || | || |||| | ||| | | | || Sbjct 28598 GGCTTCGATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCTATTGGCTTTGCCTT 28656 Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171 | |||||||| | || | | ||| || ||||||||||| |||| | | || | Sbjct 28657 CCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCG 28716 Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231 |||||| | |||||||| | |||||| || || | || | || || |||||||| | Sbjct 28717 GACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACA 28776 Query 63232 GATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 |||| ||||||||||| || || ||| |||||||||| | ||| || || || ||||| Sbjct 28777 GATCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGTG 28835 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 || || || | ||| | ||| | | |||||| |||||||| |||||||| || ||||| Sbjct 28836 TTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCA 28895 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | | ||||| |||||| || || ||||| | || | || || || | || Sbjct 28896 AATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACC 28955 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 || ||||| || | | ||| || ||| | ||||| || |||| ||| | |||| || Sbjct 28956 CTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTG 29015 Query 63471 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 || || || | | |||||| || ||||| || ||| ||| || || | |||| Sbjct 29016 GCGCGTATACAATGGACATTGAT--GCCAATTCCTCCGGCCGATTTCGATATCATGGCGC 29073 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 | ||| | | | | ||||| || || |||| | | |||| | || || |||| Sbjct 29074 ACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAAC 29133 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | |||| ||| | || | || | ||| ||||| || |||||||| || |||| Sbjct 29134 AAGACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTAA 29193 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708 | | ||| ||||| | ||||| ||||| || || | || || || ||| | Sbjct 29194 AGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTA 29253 Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768 | || || || |||||||| | |||||| ||||| || || | ||||| || |||| Sbjct 29254 TGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATTT 29313 Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828 ||||||| || || ||||||| |||||||| |||||||| ||||| || || || | Sbjct 29314 TCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGAT 29373 Query 63829 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATAC 63888 | |||| ||| |||| ||||| ||| || || | || | || || ||| || Sbjct 29374 CATAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAATGAAAC 29432 Query 63889 T-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 63947 | || || || || | || | || ||| | ||| ||| | ||||| Sbjct 29433 TCCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACTG 29492 Query 63948 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCG 64007 ||||| || || | || || |||||||| || ||||| ||||| || || | ||| Sbjct 29493 ATCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGCT 29552 Query 64008 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 64067 || || | |||||||| | ||| | || || ||| || || |||| ||||||| | Sbjct 29553 GCCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAAA 29612 Query 64068 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATT 64127 | ||||||| | || || || ||| ||| | || | ||| ||| | | | ||| Sbjct 29613 TTATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTATG 29672 Query 64128 TTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTG 64187 || |||||| | | |||| | || |||||||| || | ||| || ||||| ||| Sbjct 29673 GCAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGTG 29732 Query 64188 ATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACaaa 64237 || || || || ||| || | ||||||| |||| ||| |||| ||||| Sbjct 29733 ATCTTGTCGAA-ATGTACCTCTTCCTTGCGACCATCTCGCTTAACCACAAA 29782 >seq10162 Length=1180275 Score = 360 bits (398), Expect = 2e-94 Identities = 588/841 (70%), Gaps = 22/841 (3%) Strand=Plus/Plus Query 33007 CCCATTTTTTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 ||||||||| ||||||||||||| ||| ||| || ||||| ||||| || |||||| Sbjct 71332 CCCATTTTT-GGTATTCACCCAC---TTTGCGTTCAAAGAAATTTGTTTTACCATCCAAT 71387 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 || || |||||||||| || ||||| | ||| || ||||| || ||||| Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAAT 71447 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 ||| | || | ||| || || ||||| |||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243 || || | ||| ||| ||||| |||| || ||||| |||||||| ||| |||||| Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 33244 GTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAA 33303 || || ||| ||||| || ||| |||| | || ||| ||||||| Sbjct 71568 CGGATGATTTCAATAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGT 71627 Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || |||| || ||||| | || | ||| ||||| || || | Sbjct 71628 ACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAG 71687 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || |||||||| ||||| || ||||||||||| ||||| || || || || || Sbjct 71688 CCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAAT 71747 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGCGCTGTCATG 33479 || || || || |||||||| ||||||| | |||||| || ||| ||| ||| Sbjct 71748 ATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTG--ATG 71805 Query 33480 TA-TCCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | |||| ||| ||||||||||||||||| || || ||||| ||||| ||| Sbjct 71806 AAATCCA----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATG 71861 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||||| || ||||| | || || | || |||| || |||||||||| || |||| Sbjct 71862 GCATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTA 71921 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || |||| ||||| ||||| || || || || ||||| || | || || Sbjct 71922 TACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCT 71981 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || | || || ||| | || ||||| | ||||||||||| || || || ||| | Sbjct 71982 GTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAG 72041 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || || ||||| |||| ||||| ||| ||||| ||| | ||||| | ||| | Sbjct 72042 GCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCC 72101 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 |||||| | | ||||| || | ||| ||||||||||||||||||||||| ||||||||| Sbjct 72102 CAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCC 72161 Query 33835 T 33835 | Sbjct 72162 T 72162 >seq9684 Length=559441 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 28464 ACCCAATTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 28523 ||||| |||||| ||||| ||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 346052 ACCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAA 346111 Query 28524 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28568 ||| | | |||||| ||||||||||| ||||| | ||||| || Sbjct 346112 ATGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622787671008920