Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq9576 122 8e-23 seq9574 93.3 4e-14 >seq9576 Length=1569244 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || || ||||| ||| | |||||| | ||| | ||| | | Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196001 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || |||||| || | ||||||| | | | | ||||||||| Sbjct 196002 CAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196061 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||||||| | ||| ||||| || | || | ||||| Sbjct 196062 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196108 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || |||||||| || ||||| ||| | |||||| | ||| | ||| | | Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || |||||| || | ||||||| | | | | ||||| ||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || ||||||||||||||| | ||| ||||| || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTTG 196322 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||||| |||||||| | ||||| | ||| | ||| | | Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || |||||| || | ||||||| | | | | ||||| ||| Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 195833 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 || || |||||||||||| | ||| |||| Sbjct 195834 ATCCAGAAAGAATCTACTTTGCATTTGGT 195862 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || | ||||| ||| | ||||| | ||| ||||| | Sbjct 196566 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTAGAACCTTCT 196625 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 196626 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196685 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||||||| | || || | | | | |||||||||| Sbjct 196686 CAACGTTTGATTTTTGCTGGCAAACAATTGGAGGACGGACGCACGCTTTCCGACTATAAC 196745 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || |||||||| ||||| |||| || | ||| | ||||| Sbjct 196746 ATCCAGAAGGAATCTACACTCCATTTGGTTCTTCGTCTTCGCGGAGG 196792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 |||||||||||| | || || || || |||||||| ||| | || ||| | || | || Sbjct 195419 AAACAAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGA 195478 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 | || || || || | || ||| || ||| ||||||||||| || ||||| Sbjct 195479 GCCTTCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCC 195538 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-G 26940 || ||||||||||| || | | || || || || ||||||| | || | | | | Sbjct 195539 AGACCAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATG-GACGCACATTATCAG 195597 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| || || |||||||| || | ||| ||||||| | || |||||||| Sbjct 195598 ATTATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGG 195652 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || ||||| || | ||||| ||| | ||||| | ||| | ||| | | Sbjct 196338 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTTGAACCTTCC 196397 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| || ||| ||||| ||||| || ||||| ||||| Sbjct 196398 GATACTATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 196457 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || |||||| || | ||||||| | | | | ||||||||| Sbjct 196458 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196517 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||||||| | ||| ||||| || | || | ||||| Sbjct 196518 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196564 >seq9574 Length=1787140 Score = 93.3 bits (102), Expect = 4e-14 Identities = 231/348 (66%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 71519 GTTCGTCGTGAACTAGCAGACAATTTCTGTTTCTACAATTCCAACTATGACACTTTTTTA 71578 ||||||||||||||||| || || || |||| |||||| |||||||| | | || | Sbjct 11312 GTTCGTCGTGAACTAGCCGATAACTTTTGTTATTACAATAAAAACTATGATAATCTTAAA 11253 Query 71579 GGCGCTCCGAATTGGGCCAAGGAAACTCTGGTGATTCACAAGTCCGATTCTAGGCAATAT 71638 ||| | ||||||| |||| || | || | | | || || || Sbjct 11252 GGCCTGCACGATTGGGCAGCCAAAACCCTC---AACGACCATCGCAAAGATAAGCGATCG 11196 Query 71639 --AT-TTATAGTTTATTGCAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCT 71695 || ||||||||| | |||| ||| || || |||||||| || ||||| | Sbjct 11195 CCATGTTATAGTTTGGAGGAATTTGAGACGGCCCACACACATGATGACCTGTGGAACAGT 11136 Query 71696 GCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCC 71755 || ||| ||||| || || || ||||| || || | | || ||||| |||||| Sbjct 11135 GCCCAGTTGCAGCTGGTAAAGGAAGGAAAAATGCATGGGTTTTTGCGTATGTATTGGGCC 11076 Query 71756 AAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTA 71815 || || || | |||||| || || | || || |||| | || | ||||| ||| Sbjct 11075 AAGAAAATCTTGGAGTGGTCTGAATCACCAGAAAAGGCATTGGAAATTGCTATTCTACTA 11016 Query 71816 AACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 || |||| ||||||| | || ||| | ||||||||||| ||||| ||| Sbjct 11015 AATGATAAATACAGTTTGGATGGTAGAGATCCTAACGGCTATGTGGGT 10968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478539820542640