Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10186 206 7e-48 >seq10186 Length=270785 Score = 206 bits (228), Expect = 7e-48 Identities = 484/727 (67%), Gaps = 5/727 (1%) Strand=Plus/Minus Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 || ||||| | || |||||| | | || || ||||| ||| | || ||||| || Sbjct 28981 TCCAATGGTTTAGTGCCCATGTTAAGGGTATTCAACAATGTTGCACGTTATGTCGATCAA 28922 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 ||||| || || || || || ||||| || ||| | || || ||| | |||||| Sbjct 28921 GGTGGCGGCAAACGTCCTGGCGCATTTGCCATCTATTTGGAACCATGGCATTCGGATATT 28862 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 ||||||||| | || | ||||||||| || || || || ||||| | ||||| Sbjct 28861 TTTGAGTTTTTGGATTTAAAGAAAAACACAGGCAAGGAAGAGCATCGTGCCAGAGATCTT 28802 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| || |||||| || | || | ||||||||||| || || | | | ||| Sbjct 28801 TTCTACGCCCTTTGGATTCCCGATCTGTTTATGAAGCGTGTCGAAGAGAATGGCGACTGG 28742 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || || | || |||||| ||||||| || || ||||| ||||| ||||| | || Sbjct 28741 TCGCTAATGTGTCCACACAAATGTCCGGGGCTACAAGATGTGTGGGGAGACGAATTTGAA 28682 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAG 364119 || |||||||| || ||| ||| || || || || ||| | || ||| | Sbjct 28681 AAACTTTACGAAAAATACGAAAAGGAAGGCAAAGCCAATAGGACCGTAAAAGCGCAGGCG 28622 Query 364120 CTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAA 364179 ||||||||||||||||| || | || | || |||||||| || |||||| ||| |||| Sbjct 28621 CTATGGTTTGCCATCATCGAAGCCCAAGTGGAAACAGGAACCCCTTATATGCTGTTCAAA 28562 Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239 || | ||||| |||||| || || || | |||| || || | ||||| | Sbjct 28561 GACGCTTGCAATCGCAAGAGTAATCAACAAAATATTGGCACGATCAAATGCAGCAATTTG 28502 Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299 ||||| || ||| |||| ||| | || || || || | ||| || ||||| | || ||| Sbjct 28501 TGTACAGAAATTGTTGAGTACTCGGCACCTGATGAAATTGCAGTTTGTAATTTGGCCTCG 28442 Query 364300 ATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTGACCACCAGCATCTTTATGAC 364356 || || |||||| | ||| || | ||| | || | | | | Sbjct 28441 ATTTGTCTCAATATGTTTGTGACTCCAGAAAAGACGTATGATTTCAAGAAATTGAAGAAT 28382 Query 364357 GTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATT 364416 || || | || ||| |||||||| | || | || |||| || || |||||| | Sbjct 28381 GTGGCCAAGGTTGTTACGCGCAATCTCAATAAAATCATTGACATCAACTACTATCCATTG 28322 Query 364417 CCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCT 364475 || ||||| || | || |||||| | ||||| || |||||| |||||||||| || | Sbjct 28321 CCGGAAGCAAGAAAG-TCCAATATGAGACATCGTCCCATTGGTATTGGTGTACAAGGTTT 28263 Query 364476 CGCTGAC 364482 ||||||| Sbjct 28262 CGCTGAC 28256 Score = 111 bits (122), Expect = 4e-19 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 ||||||||| |||||||| | | ||| || ||||| || |||||||| || ||| Sbjct 28018 AAGCATGGTGTGCGCAACTCATTGCTCTTAGCACCAATGCCTACTGCTTCTACAGCCCAG 27959 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || | || || || || | || || || | ||| ||| |||| |||| || || Sbjct 27958 ATTATGGGTAATAATGAATCATTTGAGCCCTACACATCGAATATTTACACACGTCGTGTA 27899 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || |||||| | || ||| | | | |||||||| | |||| | | Sbjct 27898 CTCTCAGGTGAATTTAATATTGTCAATCACCATTTGCTCAAGGATTTGACCGAACTTGAT 27839 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATC----GCCGCTAATGGTTCTGTGCAGAA 364955 |||||| ||| |||||||| | ||||| |||| ||| ||| | || || Sbjct 27838 TTGTGGGATGAAGATATGAAGAATAAGATCATTTCTAGCCG----TGGCTCTATACAAAA 27783 Query 364956 CATTCCAG-GATTTCCAGA-AGATCTGA-AGCCTATTTACAAAACCGTATGGGAAATTTC 365012 ||| | |||| ||| | ||||| || ||| ||||||||||||| ||||||||||| Sbjct 27782 TATTGAACAGATTCCCAAAGAGATCCGAGAGC---TTTACAAAACCGTTTGGGAAATTTC 27726 Query 365013 CATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTC 365072 | | || ||| | ||||| |||||||| || || || ||| |||||| || || Sbjct 27725 CGTCAAGACAACCATCAAAATGGCCGCCGATCGTGGGGCCTTCATCGATCAGAGTCAATC 27666 Query 365073 GTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGG 365132 |||||| || | | | | || | | || || | || ||||| |||||||| Sbjct 27665 GTTTAATATACACGTAGCCGAACCCAATTACGGAAAATTGACTTCCATACATTTCTATTC 27606 Query 365133 GTGGAAATCCGGTCTTAAGACAGG 365156 ||||| | || || ||||| || Sbjct 27605 CTGGAAGGCTGGCCTCAAGACGGG 27582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303011483120834