Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10186 123 2e-23 seq9576 111 1e-19 >seq10186 Length=270785 Score = 123 bits (136), Expect = 2e-23 Identities = 642/1003 (64%), Gaps = 36/1003 (4%) Strand=Plus/Plus Query 131863 CACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTT 131922 ||| || || ||||| | ||| || |||||||| |||| ||||||||||||||||||||| Sbjct 27530 CACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTCTT 27589 Query 131923 CAAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGC 131982 | ||| || ||| ||||| |||||||| | || || ||| |||| | ||| Sbjct 27590 GAGGCCAGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTCGGC 27649 Query 131983 CACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCC-CTGTCTGCGGCCATAT 132041 || | ||| | ||||||||||||||||||| |||| ||| | || |||||||| | Sbjct 27650 TACGTGTATATTAAACGATTGACTCTGATCGATG-AAGGCCCCACGATCGGCGGCCATTT 27708 Query 132042 TCAACAATACTTTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTG 132101 | | | || |||||||||| |||| ||| | ||| | || || | | Sbjct 27709 TGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTTTGG 27768 Query 132102 GAATGTCATCGATATTCTGTACAGATCC---GTTGTTTTTGATAATTTTCATCATCAGTT 132158 |||| | || ||||| |||| ||| || | | |||| | ||| |||| || Sbjct 27769 GAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATATCTT 27828 Query 132159 CTGTCGAGTA--CACGTTGCAGTCTACGAGTTTATCGACGAGATGTTGATTTACTATTTG 132216 | | | | || ||| | ||| | | | || | ||| ||||| || || | Sbjct 27829 CATCCCACAAATCAAGTT-CGGTC----AAATCCTTGAGCAAATGGTGATTGACAATATT 27883 Query 132217 ATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGATTC 132276 | ||||||| || | || | ||| ||| | ||| || | ||||| || ||||| Sbjct 27884 AAATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTC 27943 Query 132277 GTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAATT 132336 || || |||| || || ||||| | || || ||||| || | | ||||| || Sbjct 27944 ATTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTT 28003 Query 132337 GCGCAGCCCGTGTATGGCCA-TTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTCG 132395 ||||| || || |||| | |||| | ||| || || |||| | ||||| | ||| Sbjct 28004 GCGCACACCATGCTTGGCAATTTTGGCCTTT-AGGTCAGCCCAATCCCACA----AGTCG 28058 Query 132396 ATTGAGA-GATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTA 132454 | | | ||||||||| |||| |||| | | ||| | ||| |||| ||| | Sbjct 28059 GTGGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGA 28118 Query 132455 TAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGACT-CAGGGCACCATA 132513 || | || || | || | | | || ||||| || | || || ||||||||| Sbjct 28119 TATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACT-GGCCTCCAAGGCACCATA 28177 Query 132514 ATAAATAGTCTCTGAGATTTTTCT-ATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCA 132572 ||||| || || || | ||| || ||| | | || |||| ||| || ||||| Sbjct 28178 GTAAATTGTTTC-GAAAATTTGCTGATTAAGCTTGTAGGCCTGTTCACTTTCATAGGGGT 28236 Query 132573 AATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTT 132632 || | | | | | || || | || || | || ||||| ||||| | |||| Sbjct 28237 AACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTC 28296 Query 132633 TAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGA 132692 | | ||| || | ||| | || ||||| |||| |||| || |||||||||| Sbjct 28297 TCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGA 28356 Query 132693 GATTGTTAGTGACAACTCTAGCCACTTTAT---ATAGCGATTCAAAGTCAAAGTTTTTAG 132749 ||||| || ||||| | ||||| || | || | || ||| ||| | | || Sbjct 28357 GATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTC--TTGAAA-TCATACGTCTT-- 28411 Query 132750 TCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTC 132807 || || | || ||||| ||||| ||||||||||||||| || || || | || Sbjct 28412 ---TTCTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTC 28468 Query 132808 TTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTG 132850 | | | |||| || ||||||| ||||||||| ||| Sbjct 28469 ATCAGGTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTG 28511 >seq9576 Length=1569244 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||||||||| | || || || || |||||||| ||| | |||||| | || || || Sbjct 195419 AAACAAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGA 195478 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | | || || || || | || ||| || ||| |||||||||||||| ||||| Sbjct 195479 GCCTTCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCC 195538 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-G 24162 || ||||| ||||| || | | || ||||| || ||||||| | || | | | | Sbjct 195539 AGACCAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATG-GACGCACATTATCAG 195597 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || || |||||||| ||| ||||||| || | | | |||||||| Sbjct 195598 ATTATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGG 195652 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| |||||||| | || || | ||||| || | | Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||||||||| | ||||||| | | | || || ||| Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 195833 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||||||||| | ||||| || || Sbjct 195834 ATCCAGAAAGAATCTACTTTGCATTTGGTATT 195865 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || || ||||| ||| | || ||| | ||||| || | | Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| || ||| ||||| ||||| || ||||| |||||| Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196001 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || ||||||||| | ||||||| | | | || |||||| Sbjct 196002 CAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196061 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||||||||| | ||||| || || Sbjct 196062 ATCCAGAAAGAATCTACTTTGCATTTGGTCTT 196093 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| || ||||| ||| | || ||| | ||||| || | | Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || ||||||||| | ||||||| | | | || || ||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || |||||||||||||| | ||||| || || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTT 196321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429828651295485