Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq9744 95.1 1e-14 >seq9744 Length=475756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| ||||| || | || || ||||| |||||| | ||| ||| ||| Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAG-CCAT 179391 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | || || | | | | || || |||||| ||||| ||||| | ||| || | Sbjct 179390 CAGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACC 179331 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| | | |||| || ||||||||||||||||||| | ||| | | ||||| | Sbjct 179330 AGCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACA 179271 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 | |||||||| ||||| ||| | ||| |||| Sbjct 179270 ATATTCAAAAGGAGTCAACTTTGCATTTGGT 179240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || || | || || ||||| |||||| | ||| ||| | Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | | || || ||||| ||||| ||||| | ||| || || Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | |||| || ||||||||||||||||||| | ||| | ||||||| || Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||| ||| | ||| |||| Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGT 178556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| ||||| || | || || ||||| |||||| | ||| ||| ||| Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAG-CCAT 177682 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | || || | | | | || || ||||| ||||| ||||| | ||| || | Sbjct 177681 CAGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACC 177622 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || | | |||| || ||||||||||||||||||| | ||| || ||||||| | Sbjct 177621 AACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACA 177562 Query 115464 ACATTCAAAAAGAGTCTACTATACAT 115489 | |||||||| || || || ||||| Sbjct 177561 ATATTCAAAAGGAATCGACCCTACAT 177536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| ||||| || | || ||||| ||||| || | ||| |||| ||| Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAG-CCAT 179163 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | || || | | | | || || ||||| ||||||||||| | ||| || | Sbjct 179162 CAGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACC 179103 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| | | |||| || |||||||| ||||||||| ||| | ||||||| | Sbjct 179102 AGCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTACA 179043 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 | |||||||| ||||| ||| | ||| |||| Sbjct 179042 ATATTCAAAAGGAGTCAACTTTGCATTTGGT 179012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425237797850440