Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10951 93.3 3e-14 seq9744 89.7 4e-13 seq9576 89.7 4e-13 seq7037 87.8 1e-12 >seq10951 Length=171266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||||| ||||| |||||||| ||||||||||||| || ||| | || Sbjct 139793 AGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 139852 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||||||||| || || | || | || ||||| || || | || || ||||| Sbjct 139853 TCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCT 139912 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| ||||| |||| ||||||| Sbjct 139913 TGGATCTTAGC--CTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGG 139970 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || ||||| || ||||||||||| Sbjct 139971 TCTTACCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 >seq9744 Length=475756 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || ||||||||||| |||||||| || | Sbjct 179450 CCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGAT 179509 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||||||||| || || |||| | ||||||||||| ||| Sbjct 179510 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGA 179569 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| || || | | | || || || ||| Sbjct 179570 ATGCCTTCCTTGTCCTGAATTTTAGCT--TTTACATTTTCAATTGTATCCGAAGGTTCCA 179627 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 |||| || || || || ||||||| || || || || ||||||||||| |||| Sbjct 179628 CCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTTCTAGC 179684 >seq9576 Length=1569244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || || || ||||| || ||||| ||||||| Sbjct 196792 CCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAA 196733 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||||||||||||| ||| |||| | || ||||| || ||| Sbjct 196732 AGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 196673 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||||| ||| || | | | ||||| || || | Sbjct 196672 ATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACT 196613 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||| || ||||| || || || || || ||||| Sbjct 196612 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| ||||| || || || || || ||||||||||| | | Sbjct 195880 CCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 195821 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || ||||| || ||||| || | || | |||||||| || ||| Sbjct 195820 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGA 195761 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||||| ||| || || | | | ||||||| || || Sbjct 195760 ATACCTTCCTTGTCTTGAATTTTAGCT--TTGACGTTTTCGATAGTGTCGGAAGGTTCAA 195703 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| ||||| |||| ||||| |||||||||||||| Sbjct 195702 CTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 >seq7037 Length=35088 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| |||| | ||| |||| ||||| || |||||||| || || || || || | | Sbjct 22913 CCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGAC 22972 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || ||| |||| | || ||||| ||| || Sbjct 22973 AATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGA 23032 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | |||||| ||||| Sbjct 23033 ATTCCCTCTTTGTCCTGAATCTTGGCT--TTGACATTTTCGATAGTGTCAGATGGCTCAA 23090 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || | ||| || || || || || || || || ||||| |||||||| |||| Sbjct 23091 CCTCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCATCTTGT 23144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404986855476130