Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10186 562 4e-155 seq10162 363 2e-95 seq9684 95.1 2e-14 >seq10186 Length=270785 Score = 562 bits (622), Expect = 4e-155 Identities = 1496/2269 (66%), Gaps = 34/2269 (1%) Strand=Plus/Plus Query 61844 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 61903 |||| || || ||||||| | || || || || || |||| ||| ||||| ||||| Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTC 27587 Query 61904 TTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 61962 || || || || || ||| || ||||| || || | ||| ||| | || || Sbjct 27588 TTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTC 27646 Query 61963 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62022 |||| || ||||| | |||||||| |||||||||||||| || | || || ||||| Sbjct 27647 GGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCAT 27706 Query 62023 TTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTT 62081 ||| || | ||||| | ||||||||||| ||||| |||| ||| | | | |||| Sbjct 27707 TTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGA-TCTCTT 27765 Query 62082 CTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCT 62138 |||| | | |||| || || || |||| | || ||| ||||||| || | Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 62139 CATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAA 62198 | |||| ||| || | ||||| ||| | | || | ||| |||| || | | || Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 62199 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCAT 62258 |||| || || | ||| | || ||||||||||| || || || || | || |||| Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 62259 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 62318 |||| |||| ||| || || || || ||||| ||||| ||||| | | || || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 62319 TAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62376 | ||| ||| | | ||||| | ||||| |||||| ||| | || | || Sbjct 28006 GCACACC--ATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGG 28063 Query 62377 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTAC----AT 62432 ||| || |||||||| || || ||| |||| || Sbjct 28064 TACTTTATTCCACATATCATACTGAAGAATACCTTTGCT----TACAGGGCTACCGGGAT 28119 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 |||| || || || || || |||||||| ||||||||||| ||||| || ||||| || | Sbjct 28120 ATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGT 28179 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAAT 62552 |||| |||||||| || | || ||| || | | || | || ||| | || ||| Sbjct 28180 AAATTGTTTCGAAAATTTGCTGATTAAGCTTGTAGGCCTGTTCACTTTCATAGGGGTAAC 28239 Query 62553 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62612 | ||||| | | ||| || || ||||| ||||||||||| || || | ||||||| Sbjct 28240 GCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCA 28299 Query 62613 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62672 |||| || || ||||| || | ||||| || || || || || ||||||||||||| Sbjct 28300 TATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGAT 28359 Query 62673 TTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA--- 62729 | | || || ||| |||||| ||||| ||| |||||| | | ||| Sbjct 28360 TGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTTCTGGAG 28419 Query 62730 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 | |||||||| || | || || |||| ||||||||| || | |||| || ||| Sbjct 28420 TCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCG 28479 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 || | | || || || || | ||| || || ||||| || || | ||||||||||| Sbjct 28480 AGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGAT 28539 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 ||||||| || || || || || | || || | || || || ||||| | || | Sbjct 28540 TACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGG 28599 Query 62910 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 ||| || || || ||| | || || | || |||| | ||| | | ||| Sbjct 28600 CTTCGATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCTATTGGCTTTGCCTTCC 28658 Query 62969 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 |||||||| | || | | ||| || ||||||||||| |||| | || || ||| Sbjct 28659 TTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGA 28718 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 |||| | |||||||| | |||||| || || | || | || || |||||||| ||| Sbjct 28719 CATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGA 28778 Query 63089 TCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147 || ||||||||||| || || ||| |||||||||| | ||| || || || ||||| || Sbjct 28779 TCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTT 28837 Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207 || || | ||| | ||| | | |||||| |||||||| |||||||| || ||||| | Sbjct 28838 TTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAA 28897 Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267 | ||||| |||||| || || ||||| | || | || || || | || || Sbjct 28898 TGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACCCT 28957 Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 ||||| || | | |||||||||||| ||||| || || | ||| | |||| |||| Sbjct 28958 TAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGGC 29017 Query 63328 ACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 || || | | |||||| || ||||| || ||| ||| || || | ||||| Sbjct 29018 GCGTATACAATGGACATTGAT--GCCAATTCCTCCGGCCGATTTCGATATCATGGCGCAC 29075 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 ||| | | | | || || || || |||| ||| |||| | || || ||||| Sbjct 29076 TGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAACAA 29135 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||| ||| | || | || | ||| ||||| || |||||||| |||||||| Sbjct 29136 GACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTAAAG 29195 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | ||| ||||| | ||||| ||||| || || | || || || ||| || Sbjct 29196 TAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTATG 29255 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || || || |||||||| | |||||| ||||| || || | ||||| || |||||| Sbjct 29256 CCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATTTTC 29315 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 ||||| || || ||||||| |||||||| |||||||| ||||| || || || || Sbjct 29316 AACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGATCA 29375 Query 63686 TAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT- 63744 |||| ||| |||| ||||| ||| || || | || |||| || | | ||| Sbjct 29376 TAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAATGAAACTC 29434 Query 63745 TGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCAT 63804 || || || || || | || ||| | | | ||| | ||||| || Sbjct 29435 CGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACTGAT 29494 Query 63805 CACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGC 63864 ||| || || | || || ||||| || || ||||| ||||| || || | || || Sbjct 29495 CACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGCTGC 29554 Query 63865 TAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGT 63924 || | |||||||| | ||| | || || ||| || || |||| ||||||| | | Sbjct 29555 CAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAAATT 29614 Query 63925 GTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTT 63984 ||||||| | || || |||||| ||| | || | || ||| | | | ||| Sbjct 29615 ATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTATGGC 29674 Query 63985 AATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGAT 64044 || |||||| | | ||| | || |||||||| || | ||| || ||||||||||| Sbjct 29675 AACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGTGAT 29734 Query 64045 TTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAA 64092 || || || ||| || | ||||||| |||| ||| |||| ||||| Sbjct 29735 CTTGTCGAA-ATGTACCTCTTCCTTGCGACCATCTCGCTTAACCACAAA 29782 >seq10162 Length=1180275 Score = 363 bits (402), Expect = 2e-95 Identities = 622/895 (69%), Gaps = 28/895 (3%) Strand=Plus/Plus Query 32315 TTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 32371 ||||||||| |||| || | |||| |||||| || | | || ||| ||| Sbjct 71279 TTAAAAGTCGGCATCCAGTGTAAAAACATTGTCCAAACGATTGGCTGTCACGCCCCATTT 71338 Query 32372 TTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||||||||||||||| ||| ||| || ||||| |||||||| || ||||| || | Sbjct 71339 TTGGTATTCACCCAC---TTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCAT 71395 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||||||| ||| ||||| | ||| || ||||| || |||||||| | Sbjct 71396 TTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTCAACCAG 71455 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || | ||| || |||||||| |||||| ||| | ||||||||||||||| || | Sbjct 71456 CAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAA 71515 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 ||| ||| ||||| |||| || ||||| |||||||| || || ||| || || Sbjct 71516 ATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGAT 71575 Query 32609 AG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 || ||| ||||| || ||| | || | || ||| ||||||| || Sbjct 71576 TTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTACGGCA 71633 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| || || | || ||||| | || ||||| ||||| || || | || ||| Sbjct 71634 AAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCAGGC 71693 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 ||||| ||||| || ||||||||||| ||||| ||||| || || || || || Sbjct 71694 ATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATATACCC 71753 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGCGCTGTCATGTA-TCC 32841 || || || ||||| ||||||| | |||||| || ||| ||| ||| | ||| Sbjct 71754 TCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTG--ATGAAATCC 71811 Query 32842 ACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 | ||| ||||||||||||||||| || || |||||||| || || ||||| Sbjct 71812 A----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTG 71867 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || ||||| | || || | || |||| |||||||| |||| || |||||||||| Sbjct 71868 AAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATT 71927 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||| ||||| ||||| ||||| || || |||||||| | || || || | Sbjct 71928 TCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACT 71987 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || ||| | || ||||| ||||||||||||| || || || ||| ||| || Sbjct 71988 TGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCG 72047 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33137 ||||| |||| ||||| ||| ||||| ||| | ||||| | ||| ||||||| Sbjct 72048 AAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCA 72107 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | ||||| || | ||| ||||||||||||||||||||||| |||||||||| Sbjct 72108 GTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 >seq9684 Length=559441 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27514 ACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAAT 27573 ||| | ||| || ||||| |||| |||||||| ||||||||||| ||||| ||||||| Sbjct 346052 ACCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAA 346111 Query 27574 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 27618 ||| | | |||||| ||||||||||| ||||| | ||||| || Sbjct 346112 ATGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633469734765200