Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9744 154 1e-32 seq9576 127 2e-24 seq7037 122 8e-23 >seq9744 Length=475756 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| |||||| | || || | ||||| ||| | || Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| || || ||||| ||||| || ||||| Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||||||||||||||||| ||||| || ||||||||| Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| ||||| || |||||| | || || Sbjct 177560 TATTCAAAAGGAATCGACCCTACATCTTGTACT 177528 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| |||||| | || || | ||||| ||| | || Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| || || ||||| ||||| || ||||| Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || ||||||||||||||||||| ||||| | ||||||||| Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || || || | ||||| || ||| | || | ||||||| Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGGAA 178536 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 179162 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| || |||||||| ||||| || ||||| Sbjct 179161 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACCA 179102 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || |||||||| ||||||||| ||| || | ||||||||| Sbjct 179101 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTACAA 179042 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| || || || | ||||| || ||| | || | || |||| Sbjct 179041 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTTCGTGGTGGAA 178992 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || ||||| || || ||||||| | ||||||||| | || Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| || || ||||| ||||| || ||||| Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || || |||||||||||||||| ||||| | ||||||||| Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || ||||| || || ||||| || ||| | || | || |||| Sbjct 178813 TATTCAGAAGGAATCAACTCTGCATTTGGTCCTACGTCTTCGTGGTGGAA 178764 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| |||||| | || || | ||||| ||| | || Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| ||||||| || || ||||| ||||| || ||||| Sbjct 179389 AGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 179330 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || ||||||||||||||||||| ||||| | |||||||| Sbjct 179329 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAA 179270 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || || | ||||| || || Sbjct 179269 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCT 179237 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 178537 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCCTC 178478 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| || ||| || || ||||| ||||| |||||||| Sbjct 178477 AGATACCATAGAAAATGTTAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCTGACCA 178418 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || |||||||| ||||||||| ||| || || ||||| || Sbjct 178417 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACGTTGTCGGATTATAA 178358 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| || || || | ||||| || ||| | || | ||||||| Sbjct 178357 TATCCAAAAGGAGTCAACTTTGCATTTGGTCCTACGTCTTCGTGGAGGAA 178308 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 178309 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCTTC 178250 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||||| || || ||||| ||||| || ||||| Sbjct 178249 GGATACAATTGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGAATTCCCCCAGACCA 178190 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || |||||||| ||||||||| ||| || | |||||||| Sbjct 178189 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCTGATTACAA 178130 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || | ||||| || ||| | || | || |||| Sbjct 178129 CATTCAGAAGGAGTCAACTTTGCATTTGGTCCTACGTCTTCGTGGTGGAA 178080 Score = 120 bits (132), Expect = 3e-22 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||||||| || | || ||| | || ||||| | || Sbjct 179677 AATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACAATTACATTGGAGGTGGAACCTTC 179618 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||| |||| ||| ||||| ||||| ||||| || || Sbjct 179617 GGATACAATTGAA--AATGTAAAAGCTAAAATTCAG-GACAAGGAAGGCATTCCTCCAGA 179561 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | ||||| ||||| |||||||| ||||||| ||| || | ||||| Sbjct 179560 CCAACAGCGTTTAATTTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTATCTGATTA 179501 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||| || || || | ||||| || || Sbjct 179500 CAACATTCAAAAGGAGTCAACTTTGCATTTGGTCCT 179465 >seq9576 Length=1569244 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||||| || || ||| |||| || | || |||||| | || Sbjct 195425 AATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCTTC 195484 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || | | |||| |||| ||| ||||||||||| ||||| || |||| Sbjct 195485 AGATACTATTGAAAACGTTAAAGCTAAAATTCAG-GACAAAGAAGGCATTCCTCCAGACC 195543 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || || || | ||||||| ||||| | ||||| | Sbjct 195544 AACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTATCAGATTATA 195603 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || |||||||| || || ||||| || || | ||||||||||| Sbjct 195604 ATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGG 195652 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| |||| || ||| |||||||| | ||||| || | ||| Sbjct 196566 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTAGAACCTTCT 196625 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || |||| ||| ||||| ||||| ||||| || || Sbjct 196626 GACACCATCGAAAACGTCA---AGGCCAAAATTCAA-GACAAGGAAGGTATTCCTCCAGA 196681 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | |||||||| ||||||||||| || || | ||||| | ||| || Sbjct 196682 TCAACAACGTTTGATTTTTGCTGGCAAACAATTGGAGGACGGACGCACGCTTTCCGACTA 196741 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || ||||| || || Sbjct 196742 TAACATCCAGAAGGAATCTACACTCCATTTGGTTCT 196777 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || || |||||||| | ||||| || | || Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| |||| ||| ||||| ||||| ||||| || || Sbjct 195714 GACACTATCGAAAACGTCA---AAGCTAAAATTCA-AGACAAGGAAGGTATTCCTCCAGA 195769 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || || |||||||| || || ||||||| ||| || || || || Sbjct 195770 TCAACAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTA 195829 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || |||||||| || | ||||| || Sbjct 195830 CAACATCCAGAAAGAATCTACTTTGCATTTGGT 195862 Score = 122 bits (134), Expect = 8e-23 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| ||||| || ||| | ||||| | ||||| || | || Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| |||| ||| ||||| ||||| ||||| || || Sbjct 195942 GACACTATCGAAAACGTCA---AAGCTAAAATTCA-AGACAAGGAAGGTATTCCTCCAGA 195997 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || || |||||||| || || ||||||| ||| || || || || Sbjct 195998 TCAACAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTA 196057 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || |||||||| || | ||||| || Sbjct 196058 TAACATCCAGAAAGAATCTACTTTGCATTTGGT 196090 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || ||||| || ||| | ||||| | ||||| || | || Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| ||||| ||||| ||||| || || ||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || |||||||| || || ||||||| ||| || || || ||||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||||||||| || | ||||| || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGT 196318 >seq7037 Length=35088 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || || | || || | || || ||| | ||| Sbjct 23139 ATGCAGATATTTGTTAAGACCCTTACGGGCAAGACTATAACCCTAGAGGTTGAGCCATCT 23080 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | ||| |||||||| || |||||||| || Sbjct 23079 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCGGA 23024 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||||||||| |||||||| ||||||| || || || ||||| Sbjct 23023 TCAACAACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGATTA 22964 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || | ||||| || || Sbjct 22963 TAATATTCAGAAGGAGTCTACTTTGCATTTGGTCCT 22928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433219804362905