Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10162 399 2e-106 seq14329 131 2e-25 seq10240 129 7e-25 >seq10162 Length=1180275 Score = 399 bits (442), Expect = 2e-106 Identities = 633/893 (71%), Gaps = 21/893 (2%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| || || ||||| |||||||| |||||||| | |||| ||| | || || Sbjct 71279 TTAAAAGTCGGCATCCAGTGTAAAAACATTGTCCAAACGATTGGCTGTCA---CGCCCCA 71335 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||||||||| || ||||| ||||||||||||||| || || ||||| || ||| Sbjct 71336 TTTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCAT 71395 Query 92862 ATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | || ||||| |||| || || || || | ||| || || Sbjct 71396 TTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTCAACCAG 71455 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | | ||| || |||||||| || || | ||||| || |||||||||||||| | | Sbjct 71456 CAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAA 71515 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | |||| || ||||| || || | ||| || | || ||| || || ||| | || Sbjct 71516 AT-TACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGA 71574 Query 93039 TTTCTATTACTCTAC--TATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACG 93095 |||| || | ||| | |||| ||| ||| || || | ||| ||| |||| | | ||| Sbjct 71575 TTTCAATAA---TACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA-GTACG 71630 Query 93096 -CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 |||| || ||| || |||||||| || || ||||| |||||| |||||| || || Sbjct 71631 GCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCA 71690 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | || || |||||||| |||||||| || || ||||||||||| ||||||||| Sbjct 71691 GGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATATA 71750 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA-- 93272 || || ||||| ||||| || | || |||||| ||||||| || || | ||| ||| Sbjct 71751 CCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATT--CTGATGAAA 71808 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||| || ||||||||||| || ||||||| || | |||||| || || || | Sbjct 71809 TCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGA 71868 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || || || || | || || |||||||||||||| | | | |||||||| Sbjct 71869 AAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATTT 71928 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | || || ||||| ||||| ||||||||||| || ||||| || | ||||| || | | Sbjct 71929 CGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTT 71988 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 |||| ||||| || || | || || | |||||||||||| |||||||| || || || | Sbjct 71989 GCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGA 72048 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATCCCAATCG 93571 |||| |||| | ||| ||| |||| |||| ||| |||| | |||||||||| Sbjct 72049 AAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATC-TATCCCAATCA 72107 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | || ||||| || ||||| |||||||| || |||||||| || || ||||| Sbjct 72108 GTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGC 72160 >seq14329 Length=846666 Score = 131 bits (144), Expect = 2e-25 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC 126316 || ||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 219109 ATGTACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGA 219168 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||||||||| Sbjct 219169 GGGAGCGTGGGTTCGAACCCCACACCTGACA 219199 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 222011 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGA 222070 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||| Sbjct 222071 GCGTGGGTTCGAACCCCACACCTGACAA 222098 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 214125 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 214184 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||||| Sbjct 214185 CGTGGGTTCGAACCCCACACCTGACA 214210 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 218164 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 218223 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 218224 TGGGTTCGAACCCCACACCTGACAAA 218249 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 227281 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 227340 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 227341 GTGGGTTCGAACCCCACACCTGACA 227365 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 129060 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 129001 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 129000 TGGGTTCGAACCCCACACCTGACA 128977 Score = 122 bits (134), Expect = 1e-22 Identities = 79/86 (92%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| Sbjct 216367 CAGTCAGGTTGGCCGAGCGGTCTAAGGAGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 216426 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||||| Sbjct 216427 CGTGGGTTCGAACCCCACACCTGACA 216452 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 218809 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 218868 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 218869 TGGGTTCGAACCCCACACCTGACA 218892 >seq10240 Length=262735 Score = 129 bits (142), Expect = 7e-25 Identities = 87/95 (92%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 58036 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 58095 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| | ||||| Sbjct 58096 GTGGGTTCGAACCCCACACCTGACAAACT-TTATT 58129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556718194909880