Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq9576 114 9e-21 seq9744 107 1e-18 >seq9576 Length=1569244 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | || || ||||| ||||||||||||||| |||| ||| | Sbjct 195422 CAAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCC 195481 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 |||| || | | | |||| |||||| || ||||| || | ||| | | Sbjct 195482 TTCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGA 195541 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||| ||||| ||||||||||| || || || |||||| | || | | ||||| Sbjct 195542 CCAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTATCAGATTA 195601 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| ||||| || |||||| |||| | ||| || ||||||| Sbjct 195602 TAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGG 195652 >seq9744 Length=475756 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || |||||||||| || || || ||||| || ||||| ||| | | Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| ||||| || ||| | || | |||| Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || || ||||| |||||| |||||||| || | |||||||||| Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||| ||||| ||| |||| ||||| | || || ||| Sbjct 178813 TATTCAGAAGGAATCAACTCTGCATTTGGTCCTACGTCTTCGTGGTGGA 178765 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || || ||||| |||||| ||||| || | | Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| ||||| || ||| | || | |||| Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | | || || |||||||||||| |||||||| || || |||||||||| Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| |||||||| || || ||| | ||| | ||| | || ||||| Sbjct 177560 TATTCAAAAGGAATCGACCCTACATCTTGTACTTCGTCTTCGCGGAGG 177513 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || |||| || || || || ||||| |||||| ||||| || | | Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| ||||| || ||| | || | |||| Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || || |||||||||||| |||||||| || | |||||||||| Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| ||||| || ||| | ||| |||| ||||| | || |||||| Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGGA 178537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || || || ||||| || ||||| ||| | | Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 179162 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||||| |||||||| || | || | |||| Sbjct 179161 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACCA 179102 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || || ||||||||||| ||||||||| || | |||||||||| Sbjct 179101 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTACAA 179042 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| ||||| || ||| | ||| |||| ||||| | || || ||| Sbjct 179041 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTTCGTGGTGGA 178993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || || ||||| |||||| ||||| || | | Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| |||||| ||||| || ||| | || | |||| Sbjct 179389 AGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 179330 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || || |||||||||||| |||||||| || | | |||||||| Sbjct 179329 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAA 179270 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| ||||| || ||| | ||| |||| | ||| | || || ||| Sbjct 179269 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGGA 179221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358035381497398