Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9576 140 3e-28 seq9744 131 1e-25 seq15874 93.3 4e-14 seq10943 93.3 4e-14 >seq9576 Length=1569244 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | |||||||||||||| |||||||| || Sbjct 196339 ATACCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA 196280 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || || || ||| |||| | ||| ||||| || ||| Sbjct 196279 GACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGA 196220 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| || | | ||||| || |||| | ||| Sbjct 196219 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCA 196160 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| |||| |||||||| ||||| ||||| Sbjct 196159 ACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | ||||||||||| || |||||||| || Sbjct 195883 ATACCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCA 195824 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || || || ||| |||| | ||||||||| || ||| Sbjct 195823 GACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGA 195764 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | ||| | ||||||| | ||| Sbjct 195763 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCA 195704 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| ||||| |||||||||||||| Sbjct 195703 ACTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | ||||||||||| || ||||| || || Sbjct 196111 ATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCA 196052 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || || || ||| |||| | || ||||| || ||| Sbjct 196051 GACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGA 195992 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | ||| | ||||||| | ||| Sbjct 195991 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCA 195932 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| |||| || ||||| || || ||||| Sbjct 195931 ACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || ||||| | ||||||||||| || ||||| || || Sbjct 196567 ATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCA 196508 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || || || ||| |||| | |||||| || || ||| Sbjct 196507 GACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGA 196448 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || || | | ||||| || |||| | ||| Sbjct 196447 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCA 196388 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| ||||| || ||||| || || ||||| Sbjct 196387 ACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 116 bits (128), Expect = 3e-21 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || | ||| | | || ||||| | || |||||||| || || || ||||| Sbjct 195655 ATACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCT 195596 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || || ||||||||| || |||||||| |||| || | |||||||| || Sbjct 195595 GATAAT-GTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGG 195537 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATT 114330 |||||||||||||||||| ||| ||| | |||| | | ||||| || || | | | Sbjct 195536 AGGAATGCCTTCTTTGTCCTGAAT-TTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCT 195478 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| ||| | |||||||| || | ||| || || || |||||||| Sbjct 195477 CCACCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 >seq9744 Length=475756 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || ||||| | || || || ||||||||||||||||| Sbjct 179447 ATTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCA 179506 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||| || ||| | || | |||||||||||| ||| Sbjct 179507 GATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGA 179566 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| || ||||| | ||||| || || | | ||| Sbjct 179567 GGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCC 179626 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || |||||||||| || || || || |||||||| Sbjct 179627 ACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || ||||| |||||||| ||||||||| || || || |||||| | ||| Sbjct 177536 ATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCATCTTCTAATTG 177595 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 ||| |||||| | || | |||||||||||| || ||||| ||||| || || || || Sbjct 177596 TTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATTTT 177655 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | ||| | ||| || | | || || |||| ||| | ||||| || || Sbjct 177656 GGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCTGT 177715 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 || ||| || || ||||| ||||| Sbjct 177716 CAAAGTCTTGACGAAAATTTGCAT 177739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | || || || || |||||||||||||| Sbjct 178079 ATTCCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCA 178138 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| || ||||| |||||| | || | |||||| ||||| || Sbjct 178139 GATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGG 178198 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || || | | ||||| || || | | || Sbjct 178199 GGAATTCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCC 178258 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| ||| || || ||||| ||||| Sbjct 178259 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 >seq15874 Length=5966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/151 (75%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 43834 GCTTCAATGTTACCTAAATCGCCGACGTGACGCT-CT-ATCGAATTGGGTGCGCCATGAT 43891 |||||||| ||||| |||||||| |||||||| | || |||| | |||||| ||||| | Sbjct 5750 GCTTCAATATTACCCAAATCGCCAACGTGACGGTTCTCATCGGA--GGGTGCACCATGTT 5807 Query 43892 TGCGACCAAAAGGATTGAAATGTTCGCCGGCGGACGTACATCCGTTACTGGTGTCGCCGA 43951 || ||||||||||| || || || ||||||||||| || |||| |||| Sbjct 5808 CTTTGCCTTTTGGATTGAAATGGGGTCCAGCTGATGTACATCCGTTGGTGTTGTCACCGA 5867 Query 43952 ATTCGTGCACGTGAAATCCATG-AAGACCTT 43981 |||| || ||||| || ||||| ||| |||| Sbjct 5868 ATTCATGGACGTGGAAGCCATGTAAGCCCTT 5898 >seq10943 Length=143144 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/151 (75%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 43834 GCTTCAATGTTACCTAAATCGCCGACGTGACGCT-CT-ATCGAATTGGGTGCGCCATGAT 43891 |||||||| ||||| |||||||| |||||||| | || |||| | |||||| ||||| | Sbjct 68695 GCTTCAATATTACCCAAATCGCCAACGTGACGGTTCTCATCGGA--GGGTGCACCATGTT 68638 Query 43892 TGCGACCAAAAGGATTGAAATGTTCGCCGGCGGACGTACATCCGTTACTGGTGTCGCCGA 43951 || ||||||||||| || || || ||||||||||| || |||| |||| Sbjct 68637 CTTTGCCTTTTGGATTGAAATGGGGTCCAGCTGATGTACATCCGTTGGTGTTGTCACCGA 68578 Query 43952 ATTCGTGCACGTGAAATCCATG-AAGACCTT 43981 |||| || ||||| || ||||| ||| |||| Sbjct 68577 ATTCATGGACGTGGAAGCCATGTAAGCCCTT 68547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420029498611044