Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10162 111 3e-19 >seq10162 Length=1180275 Score = 111 bits (122), Expect = 3e-19 Identities = 290/434 (67%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| |||||||||||||| || || |||||||| || | | | ||| | Sbjct 72058 CTGGCCTTTTTCGCCGCCTCTGATGGTATTGTCAATGAAAATTTAGTTGAACGTTTCTCG 71999 Query 42483 AAAGAGGTGCA-GT-ACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||||||||| || || || || || |||||||| |||||||| || ||||| || | Sbjct 71998 CAAGAGGTGCAAGTGACA--GAAGCCCGTTGCTTCTATGGCTTCCAAATTGCCATGGAAA 71941 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 | || ||||| || |||| | ||| || | || ||||| ||| | || | | Sbjct 71940 ATGTTCACTCCGAAATGTATAGTATTCTGATCGATACATACATTAAGGACCGCGATCAAC 71881 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 || | || ||||| ||||| || || ||||| | | ||||||||||| || |||| Sbjct 71880 GTGAATATCTTTTCAATGCCATTGAAACAATGCCAGCCGTTAAGAAGAAGGCCGATTGGG 71821 Query 42661 CGCTCAACTGGA--TCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 | | |||| || || || || | || || || | | | || ||| | Sbjct 71820 CCTTGTCATGGATTTCATCAGAATCG--GCTAATTTTGGAGAACGTGTTATTGCGTTTGC 71763 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 ||||| ||||| || || ||| || || ||||||||||| ||||| ||| | | Sbjct 71762 TGCCGTTGAGGGTATATTTTTCAGCGGTAGTTTTGCCTCCATCTTTTGGCTTAAG-AAAC 71704 Query 42779 GGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | ||| ||||| || | || ||||| || ||| | ||| | ||||| || ||| Sbjct 71703 GTGGTCTAATGCCTGGCTTGACATTCTCCAATGAATTGATCTCGCGTGACGAAGGCTTGC 71644 Query 42838 ATAGGGACTTTGCC 42851 || | || |||||| Sbjct 71643 ATTGTGATTTTGCC 71630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944097366535120