Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9744 152 1e-31 seq10951 143 6e-29 seq9576 136 9e-27 seq7037 102 2e-16 >seq9744 Length=475756 Score = 152 bits (168), Expect = 1e-31 Identities = 173/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | |||||| ||||| | || ||| ||||| ||||| || |||| Sbjct 177513 CCTCCGCGAAGACGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGAC 177572 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || |||||||||||||| || ||||| |||| ||||||||| |||||| Sbjct 177573 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTG---GTCTGGG 177629 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| |||||||||||||| || || || |||||||| | ||| | || Sbjct 177630 GGAATACCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCA 177689 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || || || || |||| |||||||||||| || |||||| Sbjct 177690 ACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 177740 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| || |||| | || || || ||||||| ||||| || ||||| Sbjct 179030 TCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAA 179089 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| ||||||||||||||||||||||| || || || Sbjct 179090 ATCAAACGCTGCTGG---TCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCCTTGACA 179146 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 |||||||| | ||| | || ||||| | ||||| ||||| || |||| ||||||| Sbjct 179147 TTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTG 179206 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 179207 ACGAAAATTTGCATT 179221 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | ||| | || ||| || || ||||| || |||| Sbjct 178765 TCCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGA 178824 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||||||||||||||| ||||| |||| |||||| || ||||| Sbjct 178825 TAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTG---GTCTGG 178881 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| ||||| |||||||| || || || |||||||| | ||| | || Sbjct 178882 GGGAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTC 178941 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||||| ||||| || |||| || || ||||| || |||||| Sbjct 178942 CACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATT 178993 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| || || | | ||||| || |||||||||||||| || ||||| Sbjct 179258 TCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAA 179317 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| || ||||| ||||| |||||||| || || || Sbjct 179318 ATCAAACGCTGCTG---GTCTGGGGGAATACCTTCCTTATCTTGGATTTTTGCCTTGACA 179374 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 |||||||| | ||| | |||||||| | || || || || || |||| ||||||| Sbjct 179375 TTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTG 179434 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 179435 ACGAAAATTTGCATT 179449 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||||||||| || | | ||| || || ||||||| ||||| || ||||| Sbjct 178346 TCCTTTTGGATATTATAATCCGACAACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAA 178405 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || | || || ||||| ||||| ||||| || || || || ||| Sbjct 178406 ATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTAACATTT 178465 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | ||| | || ||||| | ||||| ||||| || |||| |||||||||| Sbjct 178466 TCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACG 178525 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 178526 AAAATTTGCATT 178537 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| || |||| | ||||| || |||||||||||||| || ||||| Sbjct 178574 TCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAA 178633 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| || ||||| ||||| |||||||| || || || Sbjct 178634 ATCAAACGCTGCTG---GTCTGGGGGAATACCTTCCTTATCTTGGATTTTGGCCTTGACA 178690 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| | |||||||| | || || || || || |||| |||||| Sbjct 178691 TTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTA 178750 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 178751 ACGAAAATTTGCATT 178765 Score = 114 bits (126), Expect = 3e-20 Identities = 127/168 (76%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG--- 288366 || || || ||||||| ||||| || ||||| |||| |||||| || |||||| Sbjct 178145 GTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGG---TCTGGGGGA 178201 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||||||||||||| || || || ||||| || | ||| | || ||| Sbjct 178202 ATTCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCACT 178261 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| ||||| || |||| |||||||||||| || |||||| Sbjct 178262 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178309 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || | ||| | || || ||||| || || || || | Sbjct 179449 TCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGA 179508 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 | || || || ||||| ||||||||||| ||||| || | ||||||||| ||| Sbjct 179509 TAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTG---GTCTGG 179565 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || ||||| || ||||| ||||| ||||| || ||||| || | ||| | ||| Sbjct 179566 AGGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTC 179625 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| ||||||| ||||| ||||| ||||||||| Sbjct 179626 CACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATT 179677 >seq10951 Length=171266 Score = 143 bits (158), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | ||| | ||| ||| |||||||| || ||||||| Sbjct 139778 CCACCACGAAGACGGAGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 139837 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| |||||||| || |||||||||| ||| |||||| |||||| Sbjct 139838 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGA---TCTGGG 139894 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || ||||| || || || || ||||| || | ||| | || Sbjct 139895 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCG 139954 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||| ||||| || ||||||||||| ||||||||| Sbjct 139955 ACCTCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATT 140005 >seq9576 Length=1569244 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || | ||| | || ||| || ||||| |||||||||| Sbjct 196792 CCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAA 196733 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||||||||| || |||||||| || || || |||| ||| ||||| |||| Sbjct 196732 AGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTG---ATCTGGA 196676 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || || ||||| || || |||||||| || | || | |||| Sbjct 196675 GGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCT 196616 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 196615 ACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 120 bits (132), Expect = 7e-22 Identities = 188/265 (71%), Gaps = 12/265 (5%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | ||||| || |||||| ||||||||||| || | | |||||||| || Sbjct 195638 AAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGATAATGTGCGTCCATC 195579 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| | || || || || ||||| || | ||||| ||| || || |||||||| Sbjct 195578 TTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTG---GTCTGGAGGAATGCCTTCTTT 195522 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| ||||| ||||| |||||||| |||| ||| | || || || | || || Sbjct 195521 GTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAAT 195462 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCT---AATATTTTTA 288494 || || || || | |||||| ||||| ||||||||| ||| |||| ||||| ||| Sbjct 195461 GGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGT--TTCTGAAAATATATTTT 195404 Query 288495 ATAATGTATCGAAACGATGATGACA 288519 ||| ||| ||||| | |||||| Sbjct 195403 TTAAATTATTCAAACGCT-ATGACA 195380 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | | || || || ||||| || || || || ||||| Sbjct 196301 TTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAA 196242 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| ||||| |||| || || ||||| || |||||||| || || || || Sbjct 196241 GATCAAACGTTGTTG---ATCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGAC 196185 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| |||| | ||| ||||| | ||||| || || || |||| || || Sbjct 196184 GTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTTTT 196125 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 196124 TACGAAAATTTGCAT 196110 >seq7037 Length=35088 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || |||||||| || | | || || || ||||| ||||||||||| || || Sbjct 22949 TCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAA 23008 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | || |||||| ||| ||||| ||||| ||||| || || ||||| || ||| Sbjct 23009 ATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTT 23068 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | || || || || || || ||||| || || || ||||| || Sbjct 23069 TCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACA 23128 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 23129 AATATCTGCAT 23139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179344752885186