Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq18266 116 4e-21 seq9983 95.1 1e-14 >seq18266 Length=950389 Score = 116 bits (128), Expect = 4e-21 Identities = 227/331 (69%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| || |||||||| || | ||||| || | |||||||| | | || ||||| Sbjct 754146 AACCGGTACCAATACCATCAGCACCGTTTACCAAGACCATTGGTATAATGGGTATATACC 754087 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | ||||||||| | |||||||| || |||| | | || || ||| | | Sbjct 754086 ACTGGGGTTCAATCTTTTGACCATCATCTACCTCATAGGCCAAGAGAGGATCATCCATGG 754027 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTT--TGTGAAGATGTACCTCGTTTGAGA 171903 ||| || || ||| || | |||||| || |||||| || || | | || Sbjct 754026 GATGGAATATGAGACGGGC--CAGTGGTGACATTATTGTGAAAATATAACGAGCGCTAGC 753969 Query 171904 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGAT 171963 ||| ||||||||| | | ||| || || |||||||| | || || || | |||||| Sbjct 753968 ACAATCCTTGCCACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGAT 753909 Query 171964 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 172022 ||| || ||||||| |||| | |||||| || ||||| || || || ||||| || | Sbjct 753908 ATTATTCGAACCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGC-AGGGATACCT 753850 Query 172023 CACCGTGATGGTAGGCCGACTTGTCCGCGAC 172053 |||||||||||||||| ||| | || || || Sbjct 753849 CACCGTGATGGTAGGCAGACATTTCAGCAAC 753819 >seq9983 Length=370597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 ||| ||||| ||||||||||||||||| | || || || ||||| |||||| | | Sbjct 243645 ACCAACGGCATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGC 243704 Query 11020 AAAGATATCTCGGACTC-TCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGG 11078 ||| ||||| ||||| | | ||| ||| |||||||||||||| |||| ||| | | | Sbjct 243705 AAACATATCGCGGACACGTGATGG-ACCAACACCCACAAACATCTCCAAAAACTCTGAGC 243763 Query 11079 CGGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGC 11115 | || ||| | |||||| || || |||| |||||| || Sbjct 243764 CAGAGACAGT-GATGAAAGGCACATTGGCTTCACCGGC 243800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597200625209960