Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10186 159 3e-34 seq9744 102 8e-17 seq9576 102 8e-17 seq10951 98.7 1e-15 >seq10186 Length=270785 Score = 159 bits (176), Expect = 3e-34 Identities = 810/1267 (64%), Gaps = 37/1267 (3%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCG--CCACGAGT 152766 |||||||||||||| || ||||||||||||||||| |||||||| ||| ||| || | Sbjct 27552 GCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTCTTGAGGCC--AGCCTTCCAGGAAT 27609 Query 152767 AATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATT 152826 | || || ||||||| |||| | |||| || ||| | ||||||||||| Sbjct 27610 AGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTCGGCTACGTGTATATTAAACGATT 27669 Query 152827 GGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCCTTCA 152886 | |||||||| ||||| || ||| ||||| ||||| | || | || ||| | | Sbjct 27670 GACTCTGATCGATGAAGGCCCCACGATCGGCGGCCATTTTGATGGTT-GTCTTGACGGAA 27728 Query 152887 -TCTCCCAGGCGGTTTTGTACAAATTTTTAA-CGCTATCCGGTATACCTTCAATGTTCTG 152944 | ||||| |||||||||| | | | | | || | || || |||||| || || Sbjct 27729 ATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTTTG-GGAATCTGTTCAATATTTTG 27787 Query 152945 AATAGAGCCCTTGTGTGCAAAAATAGCGTT--TCGTAT-TTCGGGCGTGTACACGTTCAG 153001 |||||||| | | || || || || ||| ||| | ||| | || Sbjct 27788 TATAGAGCCACGGCTAGAAATGATCTTATTCTTCATATCTTCATCCC---ACAAATCAAG 27844 Query 153002 TTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCA--ACACT 153059 || | | || | || ||| | || ||||| | | ||| || || | | |||| Sbjct 27845 TTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAAATTCACCTGAGAGTACACG 27904 Query 153060 -CGTCTC-AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTT 153117 ||| | |||||| | || || | || ||||| ||||| ||||| || | || | Sbjct 27905 ACGTGTGTAAATATTCGATG----TGTAGGGCTCAAATGATTCATTATTACCCATAATCT 27960 Query 153118 GAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTC 153177 | || || | || || ||||| || | | ||| || || |||| || ||| Sbjct 27961 GGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGCGCACACCATGCTTGG 28020 Query 153178 GAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGT 153237 ||| | | |||| | | ||||||||||| | | ||| |||||||| | Sbjct 28021 CAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTACTTTATTCCACATAT 28080 Query 153238 CGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGC 153297 | ||||| | | ||| || | || || |||| | | || ||| || || Sbjct 28081 CATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTTCATAGGGACCATCTT 28140 Query 153298 GTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTT 153357 | |||||||| || || ||||| | || |||||||| || |||||| ||||| | Sbjct 28141 TCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTGTTTCGAAAATTTGCT 28200 Query 153358 TATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGG 153417 ||| || | || | ||| || || || || |||| ||| | | || ||| | Sbjct 28201 GATTAAGCTTGTAGGCCTGTTCACTTTCATAGGGGTAACGCATCAGAATTAGGGTGTCAG 28260 Query 153418 CCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG 153477 | | ||| || | ||| | || ||||| ||||| || ||| || || || Sbjct 28261 CGAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATTGGACTTTCTTGCTTCCG 28320 Query 153478 CTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTA 153537 | ||||||| ||| || || ||||| ||||| |||||| || || || | | Sbjct 28321 GCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGCGCGTAACAACCTTGGCCA 28380 Query 153538 TCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597 ||| | ||||| ||||||||| ||| |||| | || | | ||| ||| | Sbjct 28381 CATTCTTCAATTTCTTGAAATCATACGTCTTTTC-TGGAGTCACAAACAT--ATTGAGAC 28437 Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCG 153656 ||| || |||| |||||| || || | || || || | || ||||| || || || Sbjct 28438 AAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGA-GTACTCAACAATTTCT 28496 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | || | ||||||||||| || ||| | |||||| ||||| || ||||||||||| Sbjct 28497 GTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACTCTTGCGATTGCAA 28556 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773 ||||||||||| ||||| || || || || || ||||| | ||||| ||| |||| Sbjct 28557 GCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTCGATGATGGCAAAC 28616 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGC--GGCCCTCGCTCTCGTATCGCT 153831 | || || |||||||| | || | | | || ||| || | |||||| | Sbjct 28617 C-AT--AGCGCCTGCGCTTTTA--CGGTCCTATTGGCTTTGCCTTCCTTTTCGTATTTTT 28671 Query 153832 CGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGAC 153891 |||| ||| ||||| ||||| || | || || || ||||| | || |||| Sbjct 28672 CGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGACATTTGTGTGGAC 28731 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 |||| |||||||| | | | | ||| || ||| |||||||| || | ||| | Sbjct 28732 ACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGATCGGGAATCCAAA 28791 Query 153952 GCGCGTA 153958 | ||||| Sbjct 28792 GGGCGTA 28798 >seq9744 Length=475756 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || ||||| | |||||||||||||||||||||| || Sbjct 179450 CCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGAT 179509 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||| |||| | |||| |||||||||||| ||||| Sbjct 179510 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGA 179569 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | ||| | || || | | ||||| Sbjct 179570 ATGCCTTCCTTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCAC 179628 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || || || |||||||| Sbjct 179629 CTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || || | ||| | || | ||||| | | || ||||||||||| ||||| ||| Sbjct 177511 AGCCTCCGCGAAGACGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGG 177570 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || || || || || | |||||| || | | || | |||||||||||| || | Sbjct 177571 ACAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGG 177630 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | |||||||| || || |||||| || | | ||| | ||| || | | ||| | Sbjct 177631 GAATACCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAA 177690 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | |||||||| |||| ||| || || ||||| ||||| Sbjct 177691 CTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 177739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | |||||||||||||||| ||||| ||| Sbjct 178994 CCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGAT 179053 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || ||||| || | | || | |||||| ||||| || || Sbjct 179054 AAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 179113 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || |||||| || | | ||| | ||| || | | |||||| Sbjct 179114 ATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACT 179173 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || ||||| ||||| Sbjct 179174 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | |||||||||||||||| ||||| ||| Sbjct 178538 CCTCCACGGAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGAT 178597 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||| || | | || | |||||| ||||| || || Sbjct 178598 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178657 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || |||||| || | | ||| | ||| || | | ||| || Sbjct 178658 ATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACT 178717 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| ||| || || ||||| ||||| Sbjct 178718 TCCAAGGTAATAGTTTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | |||||||||||||||| ||||| || Sbjct 179222 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGAT 179281 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||| || | | || | |||||| ||||| || || Sbjct 179282 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 179341 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||||||| || | | ||| | ||| || | | ||| || Sbjct 179342 ATACCTTCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACT 179401 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| ||| || || ||||| ||||| Sbjct 179402 TCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 >seq9576 Length=1569244 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || ||||| | | || || || || ||||||||||| | Sbjct 195880 CCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 195821 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | || || |||| |||| | ||||||||| || ||||| Sbjct 195820 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGA 195761 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||| | ||| | | ||| | ||||||| | || || Sbjct 195760 ATACCTTCCTTGTCT-TGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAAC 195702 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||||| |||||||||||||| Sbjct 195701 TTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || ||||| | | || || ||||| ||||||||||| | Sbjct 196336 CCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 196277 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | || || |||| |||| | ||| ||||| || ||||| Sbjct 196276 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGA 196217 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | || |||| | || || Sbjct 196216 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196157 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| |||||||| ||||| ||||| Sbjct 196156 TCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || ||||| | | ||||||| | |||||||| ||||| || ||||||||| Sbjct 195580 TCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTG 195521 Query 138520 TCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| | ||||| | ||| | || || | | ||||||||| | || | Sbjct 195520 TC-CTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAAT 195462 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| | ||| || || || |||||||| Sbjct 195461 GGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 >seq10951 Length=171266 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | || |||||||| |||||||||||| | Sbjct 139778 CCACCACGAAGACGGAGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 139837 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||||||||||| |||| | ||| ||||| || || || Sbjct 139838 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGG 139897 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | ||| | |||||||| | ||| ||| Sbjct 139898 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACC 139957 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || || || || || || |||||||| Sbjct 139958 TCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 140004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496135313402640