Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9744 145 5e-30 seq9576 131 1e-25 seq10951 89.7 4e-13 >seq9744 Length=475756 Score = 145 bits (160), Expect = 5e-30 Identities = 157/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || || ||||| || ||||||||| || || || | ||||||||| Sbjct 177536 ATGTAGGGTCGATTCCTTTTGAATATTGTAATCG--GACAAGGTGCGGCCATCTTCTAAT 177593 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 |||||||||||| | ||||||||||||||||| ||||| |||||||| || ||| Sbjct 177594 TGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATT 177653 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| ||||||| ||||| || || || |||||||| ||||||||| Sbjct 177654 TTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCT 177713 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| || || ||||||||||| Sbjct 177714 GTCAAAGTCTTGACGAAAATTTGCAT 177739 Score = 143 bits (158), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CG 15021 || ||| ||||| | || || || ||||| || ||||||||| || || || | Sbjct 178552 TAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCG--GATAAGGTGCGGCCA 178609 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||||||||||||| | ||||||||||| ||||| ||||| |||||||| Sbjct 178610 TCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 178669 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| || ||| |||| || ||||| | ||||| || |||||||| Sbjct 178670 TCTTGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATA 178729 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||||||| ||| || || ||||||||||| Sbjct 178730 GTTTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 ||| ||||| | || || || ||||| || |||||||| | | || | | | |||| Sbjct 179239 AACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGG-TGCGGCCATCTT 179297 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||||||||||||||||| | ||||||||||| ||||| ||||| |||||||| || Sbjct 179298 CTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTT 179357 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||| || ||| ||||||| ||||| ||||| || |||||||| |||| Sbjct 179358 GGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTT 179417 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||| ||| || || ||||||||||| Sbjct 179418 TACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || || ||||| || || || || || || || ||||||||| | Sbjct 178766 CCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCG--G 178823 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | |||||||||||||| |||||| | ||||||||||| ||||| | Sbjct 178824 ATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 178883 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || |||||| || ||| ||||||| ||||| || | Sbjct 178884 GAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCA 178943 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || |||| ||||| || ||||||||||| Sbjct 178944 CTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || ||| ||||| | || || || ||||| || ||||||||| | Sbjct 178994 CCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCG--G 179051 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||||| |||||||||||| | ||||||||||| ||||| | Sbjct 179052 ATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 179111 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || |||||| || ||| ||||||| ||||| || | Sbjct 179112 GAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCA 179171 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || |||| ||| || || ||||||||||| Sbjct 179172 CTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | | || || ||||| | || || || || || ||||||||||| | | Sbjct 178082 CCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGAT 178141 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||||| |||||||||||| | ||||||||||| ||||| || Sbjct 178142 AAGG-TACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGG 178200 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || |||||| || ||| |||| || ||||| | || || Sbjct 178201 AATTCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCAC 178260 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||| ||| || || ||||||||||| Sbjct 178261 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| | || || || ||||| ||||||||||| | | || | | | ||||| Sbjct 179468 ACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGG-TACGACCATCTTC 179526 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| || ||| | || |||||||||||||| ||||| ||||||||||| Sbjct 179527 CAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTG 179586 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||||||| |||| || ||||| | ||| || || || ||||| || || Sbjct 179587 AATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTT 179646 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || |||| || || || || || ||||| || Sbjct 179647 GCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | || || || ||||| || || ||||| || || || | |||| Sbjct 178328 ACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCC--GACAACGTACGACCATCTT 178385 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||| |||||||||||| | ||||||||||| ||||| ||||| |||||||| || Sbjct 178386 CTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTT 178445 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||| || ||| ||||||| ||||| || || || || || ||||| | Sbjct 178446 GGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTCT 178505 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||| ||| || || ||||||||||| Sbjct 178506 TTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 >seq9576 Length=1569244 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || ||||| | ||||| |||||||| |||||||| || | Sbjct 196336 CCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA--G 196279 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| || || ||||| ||| | |||||||| ||||| || | Sbjct 196278 ACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAG 196219 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| || ||| || || |||| ||||||||| | ||| | Sbjct 196218 GAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAA 196159 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || ||||| || |||| |||||||| |||||||||||| Sbjct 196158 CTTCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCATA 196109 Score = 125 bits (138), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || ||||| | ||||| ||||| || |||||||| || | Sbjct 195880 CCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCA--G 195823 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| || || ||||| ||| | |||||||||||||| || | Sbjct 195822 ACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAG 195763 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| ||| || |||| ||||| ||| | ||| | Sbjct 195762 GAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAA 195703 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || ||||| || || |||| ||||| |||||||| |||||| Sbjct 195702 CTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCATA 195653 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || ||||| || || || ||||| || ||| || | | |||| || Sbjct 196775 AACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTC 196716 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||||||||| | |||||||| ||||| || ||||| ||||||||||| Sbjct 196715 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTG 196656 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||||| || || |||| || || || | |||||| || || || |||||||| Sbjct 196655 AATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTT 196596 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||| || ||||||||| Sbjct 196595 GCCAGTCAGGGTCTTTACGAAGATTTGCATA 196565 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | ||||| ||||| || ||||| || || || ||| || | | Sbjct 196549 AAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCA--GACAATGTACGACCAT 196492 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || || ||||| ||| | ||||||||||| || || ||||| |||||||||| Sbjct 196491 CTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGT 196432 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| || || |||| ||||||||| | ||| || || || || |||| Sbjct 196431 CTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGG 196372 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || ||||| || ||||| || ||||||||| Sbjct 196371 TTTTGCCAGTCAGGGTCTTTACGAAGATTTGCATA 196337 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | ||||| ||||| || ||||| || || || ||| || | | Sbjct 196093 AAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCA--GACAATGTACGACCAT 196036 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || || ||||| ||| | ||||| || ||||| || ||||| |||||||||| Sbjct 196035 CTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCTTCCTTGT 195976 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| ||| || |||| ||||| ||| | ||| || || ||||| || | Sbjct 195975 CTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAG 195916 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || |||| || ||||| || ||||||||| Sbjct 195915 TTTTGCCAGTCAAGGTCTTTACGAAGATTTGCATA 195881 Score = 95.1 bits (104), Expect = 9e-15 Identities = 165/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || |||||||| || || ||||| || || || ||||| ||| ||| || | |||| Sbjct 195634 ACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATC--TGATAATGTGCGTCCATCTT 195577 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || || ||||| | || | | |||||||| ||||| ||||| ||||| Sbjct 195576 CAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCCT 195517 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| || |||| |||||||| | || || || ||||||||||||| Sbjct 195516 GAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTTT 195457 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATT-----TG-AAATAAATTTTTTAA 15196 | || || | ||| || || || || ||||| || || ||||| ||||||||| Sbjct 195456 TGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGTTTCTGAAAATATATTTTTTAA 195400 >seq10951 Length=171266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | ||| || || ||||| |||||||| ||| || || || | |||| Sbjct 139796 ACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCATCTT 139853 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||| || ||| | |||||||| ||||| || || || ||||||||||| Sbjct 139854 CCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTT 139913 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || || || ||| |||| || || ||| | || || || || || ||||| | Sbjct 139914 GGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCT 139973 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| || || || || || || || ||||| ||| Sbjct 139974 TACCGGTGAGGGTCTTGACGAAGATCTGCATTTTT 140008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357302764466795