Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9744 125 7e-24 seq9576 120 3e-22 >seq9744 Length=475756 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| |||||||||||||||||| | ||||| ||| ||| Sbjct 178556 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178615 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||| |||||| | ||||| |||||||| || || || || || ||||| || | Sbjct 178616 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178675 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | ||| | ||| || | | ||| ||||| | ||| | ||||| Sbjct 178676 ATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTA 178735 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || ||||| ||||| Sbjct 178736 CCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||||| | || ||||| |||||||||||||||||| Sbjct 178993 TCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGA 179052 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| ||||||||||| |||||| | ||||| |||||||| || || || Sbjct 179053 TAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGG 179112 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| |||||| ||||| | ||| | ||| || | ||| || Sbjct 179113 AATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCAC 179172 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||| || || ||||| ||||| Sbjct 179173 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||||| | || ||||| || ||||| |||||||| Sbjct 178081 TCCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGA 178140 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| ||||||||||| |||||| | ||||| |||||||| || || || Sbjct 178141 TAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGG 178200 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| |||||| ||||| | ||| | || |||| | ||| || Sbjct 178201 AATTCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCAC 178260 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||| || || ||||| ||||| Sbjct 178261 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||||| | || ||||| ||||||||||||||||| Sbjct 179221 TCCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGA 179280 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| |||| ||||| |||||| | ||||| |||||||| || || || Sbjct 179281 TAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGG 179340 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || |||||| ||||| | ||| | ||| || | ||| || Sbjct 179341 AATACCTTCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTAC 179400 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || |||| ||| || || ||||| ||||| Sbjct 179401 TTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | || | ||||| || || || |||||||||||||||||| | Sbjct 177513 CCTCCGCGAAGACGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGAC 177572 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||| ||||| |||||| | ||||| ||||| || || || || Sbjct 177573 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 177632 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| |||||| ||||| | ||| | ||| || | ||| ||| Sbjct 177633 ATACCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAACT 177692 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || |||| ||| || || ||||| ||||| Sbjct 177693 TCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 177739 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||||| | || || || || ||||||||||||||| Sbjct 178765 TCCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGA 178824 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| |||| |||||||||||| | ||||| |||||||| || || || Sbjct 178825 TAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGG 178884 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || |||||| ||||| | ||| | ||| || | ||| || Sbjct 178885 AATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCAC 178944 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||||| || ||||| ||||| Sbjct 178945 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| ||||| ||||| ||||| || ||| ||| ||| ||| Sbjct 178328 ACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGACAACGTACGACCATCTTCT 178387 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| |||||| | ||||| |||||||| || || || || || ||||| || | Sbjct 178388 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGG 178447 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | ||| | ||| || | ||| ||||| | || | || || Sbjct 178448 ATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTCTTT 178507 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || ||||| ||||| Sbjct 178508 CCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 >seq9576 Length=1569244 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||||||| | ||||| ||||| || || ||||| || | Sbjct 195880 CCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 195821 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| || || ||| ||||||| ||||| ||||| ||||| Sbjct 195820 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGA 195761 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||| ||| |||| || | ||||| ||||| | | || || Sbjct 195760 ATACCTTCCTTGTCT-TGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAAC 195702 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| ||||| |||||||||||||| Sbjct 195701 TTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| |||||||| | ||||| ||||| || || || || || || || ||| | Sbjct 196552 CGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCA 196493 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || || ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct 196492 TCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTG 196433 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||||| ||||| | ||| | || || | | || ||||| | || | Sbjct 196432 TCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATG 196373 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| || ||||| || || ||||| Sbjct 196372 GTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475379030188880