Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10186 140 4e-28 seq18266 120 4e-22 seq9983 87.8 2e-12 >seq10186 Length=270785 Score = 140 bits (154), Expect = 4e-28 Identities = 870/1377 (63%), Gaps = 55/1377 (4%) Strand=Plus/Plus Query 115528 AACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCC 115587 |||||||||| | ||| | ||||| ||| | || ||||| ||||||||||| || Sbjct 27537 AACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTCTTGAGGCCA 27596 Query 115588 TGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGA----GTGTTGGACTTTCCAT 115643 |||||||| ||| | ||| || || | ||| || | | ||| | || | | Sbjct 27597 GCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTCGGCTA--CGT 27654 Query 115644 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 115703 | | | || | ||| |||||||||||| || ||||| || ||||| | || Sbjct 27655 GTATA--TTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCATTTTGAT 27712 Query 115704 CACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 ||| | |||||||| || ||| |||| || | || || | || || Sbjct 27713 GGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTTTGGGAAT 27772 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAG---ATCCTTCATATCCTT 115820 | | |||||||| |||||||||| | || || |||| || ||||||||| | Sbjct 27773 CTGTTCAATATTTTGTATAGAGCCAC--GGCTAGAA-ATGATCTTATTCTTCATATCTTC 27829 Query 115821 TGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTC 115880 ||| | | ||| | | | ||||| | | || | |||||||| | ||| || Sbjct 27830 ATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAAATTC 27889 Query 115881 ACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTT 115940 ||| | ||| || | || || || | ||||| |||||||| | ||||| || Sbjct 27890 ACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCATTATT 27949 Query 115941 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAG 116000 ||||| || |||||||| || || || ||||| ||||| | ||| | |||||| | Sbjct 27950 ACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGCGCAC 28009 Query 116001 ACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC------GTAGTTGAG--CTTT 116052 ||| | ||| |||| ||| | |||| || || | || | |||| Sbjct 28010 ACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTACTTT 28069 Query 116053 GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAAT 116112 | |||||||||| |||| || ||||||| | | || || | || Sbjct 28070 ATT--------CCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGATAT 28121 Query 116113 GTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || ||||| || || || ||| |||| ||| | || ||||| | ||| | | || Sbjct 28122 GTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGTAA 28181 Query 116173 ATTGTCTCAAAAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGGAATCAAACGCGAGAC 116230 ||||| || ||||| | ||| | ||| | ||||| || ||| | | | || Sbjct 28182 ATTGTTTCGAAAATTTGCTGATTAAGCTTG--TAGGCCTGTTCACTTTCATAGGGGTAAC 28239 Query 116231 GGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 116290 | || ||| | || |||| |||||| ||||| | ||||| || |||||||||| Sbjct 28240 GCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCA 28299 Query 116291 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 116350 |||| ||||||| || | || ||||| | || | || || | |||| |||| Sbjct 28300 TATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGAT 28359 Query 116351 TTTTGGTGACAACCTTTGTGAT-TTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 116409 | || |||||||| | | ||| | || | || | ||||| | |||| | Sbjct 28360 TGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTT-GAAATCATAC------GTCTTT 28412 Query 116410 TC---ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 116466 || | | ||| || || || || || |||| |||||| || | | ||||| Sbjct 28413 TCTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCA 28472 Query 116467 TTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTC 116526 | | |||||| | |||||| ||||||||||| | || || ||||| | || Sbjct 28473 GGTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTT 28532 Query 116527 TTTTGATTTGACT-TTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCT 116584 | |||||| ||| ||| | || || || || ||| | |||||||| || || || || | Sbjct 28533 TGTTGATT--ACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTT 28590 Query 116585 CCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCT 116643 || ||||| | || || || ||||| | | || ||| || || |||||| Sbjct 28591 CCACTTGGGCTTCGATGATGGCAAACCATAGCGCCTGC-GCTTTTACGGTCCTATTGGCT 28649 Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC-ACCCACAGCCTCTGA 116702 || |||| ||||| ||| ||| || ||||| || || |||||| | ||| Sbjct 28650 TTGCCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACA-CATCTTG 28708 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 ||||| || || | |||||| | || ||||| | ||| ||| || || ||||| Sbjct 28709 TAGCCCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTT 28768 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCAT 116821 ||| || || || || ||||| || || |||| ||||| | | || ||| ||||| | Sbjct 28769 CATAAACAGATCGGGAATCCAAAGGGCGTAGAAAAGATCTCTGGCA-CGATGCTCTTCCT 28827 Query 116822 CCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 || || || |||||||| || | ||||||| ||||| ||||||| Sbjct 28828 TGCCTGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCA 28884 >seq18266 Length=950389 Score = 120 bits (132), Expect = 4e-22 Identities = 228/331 (69%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| || |||||||| || | ||||| || | |||||||| | | || ||||| Sbjct 754146 AACCGGTACCAATACCATCAGCACCGTTTACCAAGACCATTGGTATAATGGGTATATACC 754087 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | ||||||||| | |||||||| || |||| | | || |||||| | | Sbjct 754086 ACTGGGGTTCAATCTTTTGACCATCATCTACCTCATAGGCCAAGAGAGGATCATCCATGG 754027 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTT--TGTGAAGATGTACCTCGTTTGAGA 175923 ||| || || ||| || | |||||| || |||||| || || | | || Sbjct 754026 GATGGAATATGAGACGGGC--CAGTGGTGACATTATTGTGAAAATATAACGAGCGCTAGC 753969 Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 ||| ||||||||| | | ||| || || |||||||| | ||||| || | |||||| Sbjct 753968 ACAATCCTTGCCACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGAT 753909 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 176042 ||| || || |||| ||||| | ||||| || ||||| || || || ||||| || | Sbjct 753908 ATTATTCGAACCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGC-AGGGATACCT 753850 Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCAC 176073 |||||||||||||||| ||| | || || || Sbjct 753849 CACCGTGATGGTAGGCAGACATTTCAGCAAC 753819 >seq9983 Length=370597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 222/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 ||| || ||||| || || | ||||| | || || ||||| | || || || || || Sbjct 243474 ATCGAAACGACCGGGACGTAAAAGGGCTTTATCCAGAATATCTACACGATTTGTAGCGGC 243533 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | || || | | || | ||| ||| |||||||| ||| || | |||||| | Sbjct 243534 CAGCACTACAACGTTGGTGGTGGTATTGAAACCATCCATTTCAACCAGCAATTGATTCAA 243593 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGC-ACTGCGTTGCTTACCGACGG 12882 || | || ||||| | | || || | || || || |||| ||| |||| Sbjct 243594 TGTGTTCTCCTGTTCAG-AGTGGCCACCAAAGGACTTGCCACCACGTTTACGACCAACGG 243652 Query 12883 CGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATAT 12942 | |||||||| || ||||| | || || || ||||| |||||| | |||| |||| Sbjct 243653 CATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGCAAACATAT 243712 Query 12943 CTCGCACTC-TCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA-ACA 13000 | || || | | ||| ||| ||||||||||||||||||| ||| | | | | || ||| Sbjct 243713 CGCGGACACGTGATGG-ACCAACACCCACAAACATCTCCAAAAACTCTGAGCCAGAGACA 243771 Query 13001 TTGGATGAAGGGGACGTTGGATTCACCCGC 13030 | |||||| || || |||| |||||| || Sbjct 243772 GT-GATGAAAGGCACATTGGCTTCACCGGC 243800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613350088474920