Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9576 131 4e-25 seq9744 118 2e-21 seq10951 104 6e-17 seq7037 95.1 3e-14 >seq9576 Length=1569244 Score = 131 bits (144), Expect = 4e-25 Identities = 148/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || || |||| ||||||||||| ||| || | |||||||||| |||||| || Sbjct 195851 AGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 195792 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||| | |||||| || || ||| ||| ||||| || ||||| ||| || | Sbjct 195791 GGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAAT-TTTAGCTT 195733 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | ||| ||||| ||||| | | ||| || ||||| ||||| ||||| || || | | Sbjct 195732 TGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCAGTCAATG 195673 Query 199611 TTTTCACAAAAATTTG 199626 |||| |||||||| || Sbjct 195672 TTTTAACAAAAATCTG 195657 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | || | ||| || || ||||||| ||||||||||| ||| || Sbjct 196330 CGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTA 196271 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| ||||||||||| | ||| || || || ||| ||| ||| Sbjct 196270 CGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCT 196211 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| ||| | || || | | ||| || ||||| Sbjct 196210 TCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAG 196151 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||| || |||||||| Sbjct 196150 GTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTG 196113 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | || | ||| || || || |||| ||| ||||||| ||| || Sbjct 196558 CGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTA 196499 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| ||||||||||| | ||||||||| || ||| ||| ||| Sbjct 196498 CGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCT 196439 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| ||| ||| | || || | | ||| || ||||| Sbjct 196438 TCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAT 196379 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || || || || ||||| Sbjct 196378 GTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTG 196341 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | || | ||| || || || |||| ||| ||||||| ||| || Sbjct 196102 CGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTA 196043 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| ||||||||||| | || || || || ||| ||| ||| Sbjct 196042 CGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCT 195983 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || ||||| ||| || || ||| ||||| ||||| | | ||| || ||||| Sbjct 195982 TCCTTGTCTTGAAT-TTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAA 195924 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | || || || || ||||| Sbjct 195923 GGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTG 195885 >seq9744 Length=475756 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || | ||| ||||||||||| | ||||| || | || || Sbjct 179000 CGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTA 179059 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || || ||||| || | |||||||||||| || ||||||| Sbjct 179060 CGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCT 179119 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| || || ||| || ||| | ||| |||| || || || ||||| Sbjct 179120 TCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAA 179179 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || |||||||| Sbjct 179180 GTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTG 179217 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || | ||| ||||||||||||| || || || | ||| || Sbjct 178316 CGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGACAACGTA 178375 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || || ||||| || | |||||||||||| || ||| ||| Sbjct 178376 CGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCT 178435 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||| | ||| |||| | || || ||||| Sbjct 178436 TCCTTATCTTGGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAA 178495 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || |||||||| Sbjct 178496 GTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTG 178533 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || | ||| |||||||| || | |||||| |||| || || Sbjct 178088 CGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGATAAGGTA 178147 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| || || ||||| || | |||||||||||| || ||||||| Sbjct 178148 CGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCT 178207 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| || ||| | || || | | || || ||||| Sbjct 178208 TCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCACTTCCAAA 178267 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || |||||||| Sbjct 178268 GTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTG 178305 Score = 109 bits (120), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | || | ||| ||||||||||| | |||||| |||| || || Sbjct 179456 CGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTA 179515 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || ||||||||||| || | |||||| ||||| ||| ||| ||| Sbjct 179516 CGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCT 179575 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| ||| || || || ||| | || || | | ||| || ||||| Sbjct 179576 TCCTTGTCCTGAAT-TTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAA 179634 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || ||||| || || | || ||||| || || || |||||| Sbjct 179635 TGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTG---CATTTT 179679 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || | ||| ||||||||||| | ||||| |||| || || Sbjct 179228 CGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTG 179287 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | || || || ||||| || | |||||||||||| || ||| ||| Sbjct 179288 CGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCT 179347 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || ||| ||| || ||| | ||| |||| || ||||| ||||| Sbjct 179348 TCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAG 179407 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || | ||| || || |||||||| Sbjct 179408 GTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTG 179445 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || ||||| || ||||| || | ||||| || | || || Sbjct 178772 CGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTG 178831 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | || ||||| ||||| || | |||||||||||| || ||| ||| Sbjct 178832 CGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCT 178891 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| || ||| | ||| |||| || || || ||||| Sbjct 178892 TCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAA 178951 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||||| || |||||||| Sbjct 178952 GTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTG 178989 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||||||||| | ||||| || | || || | |||||||| | || || || Sbjct 178567 AGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCTAATTGTTTGCC 178626 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||| || | |||||||||||| || ||| ||||| || || || || ||| Sbjct 178627 AGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATTTTGGCCTT 178686 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||| |||| | ||||| ||||| || || || ||||| || | ||| Sbjct 178687 GACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTACCTGTCAAAGT 178746 Query 199612 TTTCACAAAAATTTG 199626 || || |||||||| Sbjct 178747 CTTAACGAAAATTTG 178761 >seq10951 Length=171266 Score = 104 bits (114), Expect = 6e-17 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| ||||||||| | ||| || | |||||||||| || || ||| Sbjct 139808 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 139867 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||| || || || || || ||||| || || ||||| ||| Sbjct 139868 GCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGGATCTTAGCCTTG 139927 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | |||||| | | || || ||||| ||||| |||||||| ||||| || Sbjct 139928 ACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTACCGGTGAGGGTC 139987 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || || || || || |||||| Sbjct 139988 TTGACGAAGATCTG---CATTTT 140007 >seq7037 Length=35088 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | || | ||| |||||||| || | || || |||| ||| || | ||||| Sbjct 22927 CAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGGCCATC 22986 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || |||||||| || || | || || || ||||| |||||| ||| || Sbjct 22987 TTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTC 23046 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| || || ||||| ||||| | || || || || | || || || Sbjct 23047 CTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGT 23106 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || ||||| || || Sbjct 23107 CTTGCCCGTAAGGGTCTTAACAAATATCTG 23136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178612145237629