Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9576 114 1e-20 seq9744 100 3e-16 seq10951 95.1 1e-14 >seq9576 Length=1569244 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| |||||| ||| || |||||||| |||||||| || | || || | Sbjct 196325 ACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACC 196266 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||||||||| ||||| || || || || | || | | ||||| Sbjct 196265 ATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 196206 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | || ||| | ||| || |||| ||||| Sbjct 196205 GTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGAT 196146 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| |||| ||||| || || |||||||| Sbjct 196145 AGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| |||||| ||| || || ||||| || ||||| || Sbjct 196564 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196505 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||||||||||||||| ||||| |||||||| || | || Sbjct 196504 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 196445 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| || || ||||| | | | || ||| | ||| || Sbjct 196444 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196385 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||||||| ||||| || || || ||||||||||| Sbjct 196384 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| |||||| ||| || || ||||| |||||||| || | || || | Sbjct 195869 ACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACC 195810 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||||||||| ||||| ||||| || || | || | | ||||| Sbjct 195809 ATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTT 195750 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| || || |||| | | | |||||| | ||| || |||| ||||| Sbjct 195749 GTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGAT 195690 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| ||||||||||| || ||||| Sbjct 195689 GGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| |||||| ||| || || ||||| || ||||| || Sbjct 196108 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196049 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||||||||||||||| |||||||| || || || | || Sbjct 196048 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGA 195989 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| || || |||| | | | |||||| | ||| || Sbjct 195988 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACT 195929 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| |||||||| |||| || || || ||||||||||| Sbjct 195928 TCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | |||| ||| | |||| ||||| ||||| || |||||||| Sbjct 196793 GCCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 196734 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| |||| || | || ||||| || || ||||| || || || || | || Sbjct 196733 AAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGG 196674 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | | |||||||| || || ||||| | | | ||||| | ||| || Sbjct 196673 AATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTAC 196614 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||||||| ||||| || || || ||||||||||| Sbjct 196613 TTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 >seq9744 Length=475756 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || ||||||||| |||||||| ||||||| || || | || || Sbjct 179012 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCT 179071 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| ||||| ||||| ||||| ||||||||||| | || | | || || ||| | Sbjct 179072 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGG 179131 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | || || | ||||| |||| |||||||| || Sbjct 179132 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 179191 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| || || || || ||||||||| Sbjct 179192 CCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || |||||| || || ||||| || |||| || || | || || Sbjct 178100 ACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGATAAGGTACGACCATCTTCT 178159 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| ||||| ||||| ||||| ||||||||||| | || | | ||||| ||| | Sbjct 178160 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGG 178219 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | || || | ||||| |||| |||||||| || Sbjct 178220 ATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCACTTCCAAAGTGATGGTCTTT 178279 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| || || || || ||||||||| Sbjct 178280 CCAGTCAAAGTCTTGACGAAAATTTGCATT 178309 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| |||||| || ||||||||||||||| || || || Sbjct 178310 CCTCCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGAC 178369 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || ||||| ||||| ||||| ||||| ||||||||||| | || Sbjct 178370 AACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGA 178429 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || |||||| ||| | | | | || || | ||||| Sbjct 178430 ATACCTTCCTTATCTTGGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACT 178489 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || |||| || || || || ||||||||| Sbjct 178490 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178537 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| |||||| || ||||||||| |||||||| |||||| Sbjct 178538 CCTCCACGGAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGAT 178597 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || | || ||||| ||||| ||||| ||||||||||| | || Sbjct 178598 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178657 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||| || ||||| | | | || || | || || Sbjct 178658 ATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACT 178717 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || ||||| || |||| || ||||| || ||||||||| Sbjct 178718 TCCAAGGTAATAGTTTTACCTGTCAAAGTCTTAACGAAAATTTGCATT 178765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||| || |||||||| ||||||| ||||| | || || Sbjct 178784 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178843 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || || || ||||| ||||| ||||||||||| | || | | ||||| || | Sbjct 178844 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178903 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | || || | ||||| |||| |||||||| || Sbjct 178904 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 178963 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| |||||||| || ||||||||| Sbjct 178964 CCAGTCAATGTTTTAACGAAAATTTGCATT 178993 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || ||||||||| |||||||| || |||| ||||| | || || Sbjct 179240 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCT 179299 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || ||||| ||||| ||||| ||||||||||| | || | | ||||| || | Sbjct 179300 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 179359 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | || || | || || |||| || || ||||| Sbjct 179360 ATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTTA 179419 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| || || || || ||||||||| Sbjct 179420 CCTGTCAAAGTCTTGACGAAAATTTGCATT 179449 >seq10951 Length=171266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || ||||||||||| ||||||||||| | ||||| | || || Sbjct 139796 ACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 139855 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || || |||||||| ||||| || || || || | || | | |||||||| | Sbjct 139856 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGG 139915 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| | || || |||| |||||||| || Sbjct 139916 ATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTA 139975 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || || || || ||||| |||||||| Sbjct 139976 CCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565093649511240