Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9983 95.1 2e-14 seq18266 82.4 9e-11 >seq9983 Length=370597 Score = 95.1 bits (104), Expect = 2e-14 Identities = 243/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 ||| || ||||| || || | || || | ||| || ||||| || ||||| || ||||| Sbjct 243474 ATCGAAACGACCGGGACGTAAAAGGGCTTTATCCAGAATATCTACACGATTTGTAGCGGC 243533 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | || |||| || | ||| ||||||||||| || || | || || | Sbjct 243534 CAGCACTACAACGTTGGTGGTGGTATTGAAACCATCCATTTCAACCAGCAATTGATTCAA 243593 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC-ACTGCGTTGCTTTCCCACGG 16065 || | ||| ||||| | | || || | || || || |||| || |||| Sbjct 243594 TGTGTTCTCCTGTTCAG-AGTGGCCACCAAAGGACTTGCCACCACGTTTACGACCAACGG 243652 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 16125 ||||||| ||||| ||||| | ||||| || ||||| || || | |||| | || Sbjct 243653 CATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGCAAACATAT 243712 Query 16126 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACAT 16184 | || ||||| | || ||||| ||||||||||||| ||| | || | | || ||| Sbjct 243713 CGCGGACACGTGATGGACCAACACCCACAAACATCTCCAAAAACTCTGAGCCAGAGACAG 243772 Query 16185 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 16244 | |||||| || ||||| | |||||| ||| | || ||| | | ||| |||||||| Sbjct 243773 T-GATGAAAGGCACATTGGCTTCACCGGCAGTAGCCTTGGCCAACATAGTTTTACCCGTG 243831 Query 16245 CCTGG 16249 || || Sbjct 243832 CCGGG 243836 >seq18266 Length=950389 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 176879 TGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAG 176938 ||| ||| | ||| |||||||||||| | || ||||| | || || ||||| || Sbjct 752994 TGTTTGAACGTGGCCTCACGAACATTCAACAATTTACCACGCAATGGAAATACACCATAA 752935 Query 176939 TGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCT 176998 || ||||||| ||| ||||| | || || || | ||| || || |||||||| Sbjct 752934 AAATTACGACCAATAACACCAAGACCAGACACAGCCAGAGATTTGGCTGAGTCACCCTCA 752875 Query 176999 GTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAAT 177058 || | || || |||||| || || | | ||| || || | ||| ||||| ||||| Sbjct 752874 GTGAGAATTAGAGTACACATGTAGGAATTTTTCGTGCCAGCTTCGTTGGCATCCTCCAAC 752815 Query 177059 TTGGGAATACCAGTAATTTTGGA 177081 ||||| ||||| | ||||| || Sbjct 752814 TTGGGTATACCCTTGATTTTTGA 752792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620583435630640