Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq10162 134 2e-26 seq18266 131 2e-25 seq10186 87.8 2e-12 >seq10162 Length=1180275 Score = 134 bits (148), Expect = 2e-26 Identities = 288/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || |||||||| | ||| |||||||| || |||||||| | ||| || ||||||| Sbjct 71343 TATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCATTTCCATG 71402 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAAC------TTGTTTCAGA 119321 ||| ||||||||||||| || ||||| ||| ||||| || ||| Sbjct 71403 AAGGGGAAAGGATTTTTGGTATTGTAGATT-----TTG-CCAACATCCAATTCAACCAGC 71456 Query 119322 AGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA 119381 |||||||||| ||| | || |||||||| ||||| ||| ||||||| || || | | Sbjct 71457 AGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAAA 71516 Query 119382 TTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATG 119441 ||||| || ||||| || | ||| | || || || | ||||| ||| | ||| Sbjct 71517 TTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGATT 71576 Query 119442 GAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGA-GTTTAAACAACTCTACGGCAAA 119500 |||| |||| | | ||| || | | | ||| ||| |||| | ||||||||| Sbjct 71577 TCAATAATACGTTCT-TTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTACGGCAAA 71635 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCCAGGCA 119559 || ||| | ||||| || || ||||| | ||||| ||| | ||| ||||||| Sbjct 71636 ATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAG-CCAGGCA 71694 Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619 | || || | |||||| ||||||||||||| |||||| || || || || |||| Sbjct 71695 TTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATATACCCT 71754 Query 119620 CCAC 119623 | || Sbjct 71755 CAAC 71758 >seq18266 Length=950389 Score = 131 bits (144), Expect = 2e-25 Identities = 286/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Minus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||||||||| |||| |||||||||||| ||||| |||| | | || || || Sbjct 754146 AACCGGTACCAATACCATCAGCACCGTTTACCAAGACCATTGGTATAATGGGTATATACC 754087 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGG 167476 | | ||||||||| |||||||||| || ||| | | | |||||| ||| Sbjct 754086 ACTGGGGTTCAATCTTTTGACCATCATCTACCTCATAGGCCAAGAGAGGATCATCCATGG 754027 Query 167477 GATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTC--GTAAAGATGTACCTCGTCTGAGA 167534 ||| ||| | || ||| |||| | || || || || || | | || Sbjct 754026 GATGGAATATGAGACGGGCCAG--TGGTGACATTATTGTGAAAATATAACGAGCGCTAGC 753969 Query 167535 CGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGAT 167594 ||||||||||||| | | || ||||| |||||||| | ||||| || | |||||| Sbjct 753968 ACAATCCTTGCCACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGAT 753909 Query 167595 GTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTT 167653 |||||||| ||| ||| | | |||||| || || || || | || ||||| || | Sbjct 753908 ATTATTCGAACCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGC-AGGGATACCT 753850 Query 167654 CGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCT 167713 | ||||| ||||| ||| | ||||||| || | | | | ||| |||||||| | | Sbjct 753849 CACCGTGATGGTAGGCAGACATTTCAGCAACCGAACCAGAAAGCTGGGCAACCTTAACTT 753790 Query 167714 CATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGAC 167773 || |||| ||| || ||| || | ||||||| || || || ||||||| | Sbjct 753789 CACGTTTGTCATTACGTTTGAAGCAGGTGAACATAACTTTACGCTGGCCGGGTTTGAAGC 753730 Query 167774 CATC 167777 |||| Sbjct 753729 CATC 753726 >seq10186 Length=270785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 110503 CCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGA 110562 ||||||| ||||| || ||| | | |||||||| | ||| ||||||| || Sbjct 28653 CCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGC 28712 Query 110563 CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATG 110622 ||| |||| ||||| | || ||||| | ||| ||| || || | |||||| Sbjct 28713 CCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATA 28772 Query 110623 AACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCT 110682 ||||| || |||||||| | || ||||||| || | | |||| |||||| | ||| Sbjct 28773 AACAGATCGGGAATCCAAAGGGCGTAGAAAAGATCTCTGGCACGATGCTCTTCCTTGCCT 28832 Query 110683 TGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 ||| || |||||||| || | |||||||| ||||||||||| | ||||| Sbjct 28833 GTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGA 28890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588825170608600