Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10186 183 4e-41 seq9983 107 2e-18 seq18266 102 1e-16 >seq10186 Length=270785 Score = 183 bits (202), Expect = 4e-41 Identities = 884/1391 (64%), Gaps = 30/1391 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || || |||| |||||||| ||||| ||||||||||||||| || || || || || Sbjct 27912 TAAATATTCGATGTGTAGGGCTCAAATGATTCATTATTACCCATAATCTGGGCTGTAGAA 27971 Query 105995 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 || || ||||||||||| | | || || ||| || | ||| | |||| || Sbjct 27972 GCAGTAGGCATTGGTGCTAAGAGCAATGA--GTTGCGCACACCATG---CTTGGCAATTT 28026 Query 106053 ---CCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATT 106109 |||| || || |||| || | | ||| | | | |||||||||| | | Sbjct 28027 TGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTACTTTATTCCACATATCATACT 28086 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 |||| | |||| | || ||| | |||| ||||||| ||| | |||| Sbjct 28087 GAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTTCATAGGGACCATCTTTCTCAG 28146 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 ||| |||||| || ||||||| || | | || || ||||| || || | ||| | Sbjct 28147 CCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTGTTTCGAAAATTTGCTGATTAA 28206 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 || | ||| | || ||| | | ||| || || ||| | || |||| || Sbjct 28207 GCTTGTAGGCCTGTTCACTTTCATAGGGGTAACGCATCAGAATTAGGGTGTCAGCGAAAC 28266 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 106349 |||| ||||| | |||||| || | |||| |||||| ||||||| || | | | Sbjct 28267 CTTGTACACCAATACCAATGGGACGATGTCTCATATTGGACTTTCTTGCTTCCGGCAATG 28326 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT-TTCA 106408 |||| | || ||||||||| | || ||||| ||||||| ||| | | ||| Sbjct 28327 GATAGTAGTTGATGTCAATGATTTTATTGAGATTGCGCGTAACAACCTTGGCCACATTCT 28386 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 | || || || | ||||| | || | ||| | | ||| || | || || Sbjct 28387 TCAATTTCTTGA-AATCATACGTCT---TTTCTGGAGTCACAAACATATTGAGACAAATC 28442 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || |||||||| ||||| || | ||||| | | |||||| | ||||||||||||| Sbjct 28443 GAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGAGTACTCAACAATTTCTGTACAC 28502 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 || ||| | || ||||| || | ||| | ||| |||||||| ||||| || || Sbjct 28503 AAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACTCTTGCGATTGCAAGCGTCT 28562 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||| | ||||| || || || || || ||| || | | || || || ||| | | Sbjct 28563 TTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTCGATGATGGCAAACCATAGC 28622 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 | ||| || ||| | ||||| || ||| ||||| ||| ||| || Sbjct 28623 GCCTGCG-CTTTTACGGTCCTATTGGCTTTGCCTTCCTTTTCGTATTTTTCGTAAAGTTT 28681 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 |||||| || || ||| | | || || || || |||| |||||| | || || Sbjct 28682 TTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGACATTTGTGTGGACACATTAGCGA 28741 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| | ||| ||| || || |||||||| || || || |||||||| |||| | || Sbjct 28742 CCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGATCGGGAATCCAAAGGGCGTAGAA 28801 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 |||||||| ||| |||||| | ||| ||| ||| || | ||||| | Sbjct 28802 AAGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTTTTTCTTTAAATCCAAAAACTCAAA 28861 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAG 106943 ||||||| |||||||| || | ||||| || | | || | || | |||| | Sbjct 28862 AATATCCGAATGCCATGGTTCCAAATAGATGGCAAATGCGCCAGGACGTTTGCCGCC-AC 28920 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 |||||| ||||| || || ||| ||||| | | ||| || | | ||||| | Sbjct 28921 CTTGATCGACATAACGTGCAACATTGTTGAATACCCTTAACATGGGCACTAAACCATTGG 28980 Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063 || ||||| || || |||| || | ||||| | | | ||||| | || | Sbjct 28981 ATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGGCGCGTATACAATGGACATTGATGC 29040 Query 107064 CAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 |||| || || ||| | || || || | |||||| | | ||| || | | |||| Sbjct 29041 CAATTCCTCCGGCCGATTTCGATATCATGGCGCACTGTTCAACAGACTTGAAAA--TACC 29098 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGT 107179 | || || || || ||| | ||||| ||| |||| ||| || ||||| Sbjct 29099 TTCAATCGAATCAGCCACCATGGTCAGGAGGAAACAAGACGACAGCTGGGGGAGATTGGT 29158 Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCG 107239 | ||||| || || ||||| | || ||| | || || || || | | || | Sbjct 29159 GG--CAGCAGCAAATAGAGTTGGAGAAGCATGAGTAAAGTAACGTTCCGAAAGCAAGTTG 29216 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | ||| |||||||||||| || || ||||| | ||||||||||| | | Sbjct 29217 TAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTATGCCCACAGCCACACGCATGAGC 29276 Query 107300 ATGTATTGGGG 107310 |||| ||| || Sbjct 29277 ATGTGTTGAGG 29287 >seq9983 Length=370597 Score = 107 bits (118), Expect = 2e-18 Identities = 246/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||| || ||||| ||||| | || || | ||| || ||||| || ||||| || ||||| Sbjct 243474 ATCGAAACGACCGGGACGTAAAAGGGCTTTATCCAGAATATCTACACGATTTGTAGCGGC 243533 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 | || |||| || ||| ||||||||||| || || | ||| || | Sbjct 243534 CAGCACTACAACGTTGGTGGTGGTATTGAAACCATCCATTTCAACCAGCAATTGATTCAA 243593 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC-ACTGCGTTGCTTTCCCACGG 9372 || | ||| ||||| | | || || | || || || |||| || |||| Sbjct 243594 TGTGTTCTCCTGTTCAG-AGTGGCCACCAAAGGACTTGCCACCACGTTTACGACCAACGG 243652 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||| ||||| | ||| || || ||||| ||||| || |||| | || Sbjct 243653 CATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGCAAACATAT 243712 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACAT 9491 |||| || | | | || ||||| ||||||||||||| ||| | || | | || ||| Sbjct 243713 CGCGGACACGTGATGGACCAACACCCACAAACATCTCCAAAAACTCTGAGCCAGAGACAG 243772 Query 9492 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | |||||| || ||||| | |||||| ||| | || ||| | | ||| |||||||| Sbjct 243773 T-GATGAAAGGCACATTGGCTTCACCGGCAGTAGCCTTGGCCAACATAGTTTTACCCGTG 243831 Query 9552 CCTGG 9556 || || Sbjct 243832 CCGGG 243836 >seq18266 Length=950389 Score = 102 bits (112), Expect = 1e-16 Identities = 312/478 (65%), Gaps = 6/478 (1%) Strand=Plus/Minus Query 168240 ATATTCTCCTTGATATCCTTTGGATTGAATGGTGGTACATAGCAACTGA--ATCCCGTAC 168297 |||||| | | |||||| |||||||| || | ||| || | ||| | || |||| Sbjct 754195 ATATTCCTCATTATATCCCTTGGATTG--TGATTGTAGATTTTAGTTGACCAACCGGTAC 754138 Query 168298 CGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAGTCTGGTT 168357 | ||||| || | || || || | ||||||||||| | || || || | | |||| Sbjct 754137 CAATACCATCAGCACCGTTTACCAAGACCATTGGTATAATGGGTATATACCACTGGGGTT 754078 Query 168358 CAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGATCAAAGA 168417 |||| | |||||||| || ||| | || || |||||| |||| || | Sbjct 754077 CAATCTTTTGACCATCATCTACCTCATAGGCCAAGAGAGGATCATCCATGGGATGGAATA 754018 Query 168418 TCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGAAGCATCCTTAC 168477 | || ||| | | | | |||||||||| || | | || | |||||| | Sbjct 754017 TGAGACGGGCCAGTGGTGACATTATTGTGAAAATATAACGAGCGCTAGCACAATCCTTGC 753958 Query 168478 CACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAAC 168537 ||||| | | ||| ||||| |||||||| | || || || | || || || || |||| Sbjct 753957 CACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGATATTATTCGAAC 753898 Query 168538 CCGTGTAGTCGTTTGCCAACTTAACAATCGT-GTCCGCTAAGGATACTTCACCATGGTGG 168596 || |||| | ||||| |||||||| || | || | |||||| ||||| || ||| Sbjct 753897 CCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGC-AGGGATACCTCACCGTGATGG 753839 Query 168597 TACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGA 168656 || |||||| | || || || | | | || || || ||||| | |||| ||| | Sbjct 753838 TAGGCAGACATTTCAGCAACCGAACCAGAAAGCTGGGCAACCTTAACTTCACGTTTGTCA 753779 Query 168657 TTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCCGCCA 168714 || | |||||| | |||| ||||| | ||| || |||| |||||| ||| Sbjct 753778 TTACGTTTGAAGCAGGTGAACATAACTTTACGCTGGCCGGGTTTGAAGCCATCCACCA 753721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589829713291880