Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9576 163 6e-35 seq9744 147 5e-30 seq10951 120 7e-22 seq10186 89.7 1e-12 >seq9576 Length=1569244 Score = 163 bits (180), Expect = 6e-35 Identities = 159/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || ||||| || ||||| ||||| | | || | |||||||| |||||| Sbjct 195628 TGAAGTGTTGATTCTTTCTGGATATTATAATCTGATAATGTGCGTCCATCTTCAAGCTGC 195569 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| |||| |||||||||||||||||||||||||||||| |||||||| Sbjct 195568 TTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGAATTTTA 195509 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| ||||| || || ||| ||||| || | ||||| || || || || Sbjct 195508 GCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTTTTGCCAGTT 195449 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 ||||| || ||||| | ||||||| Sbjct 195448 AAAGTCTTCACGAAGATCTGCATTT 195424 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||| || ||||| || | | || | |||||||| | |||||| || Sbjct 196307 AGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 196248 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | |||||||| ||||||||||| ||||| ||||| || || || ||| Sbjct 196247 GGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTT 196188 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| || || ||| ||| ||||| | ||| | || || || ||||| || Sbjct 196187 GACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGT 196128 Query 195123 TTTTACGAACACTTGCAT 195140 ||||||||| | |||||| Sbjct 196127 TTTTACGAAAATTTGCAT 196110 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || || || || || | | || | |||||||| | |||||| || Sbjct 196079 AGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 196020 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | |||||||| ||||||||||| ||||| |||||||||||||| || Sbjct 196019 GGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 195960 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| || || ||||| ||| ||| ||||| | ||| | || || || ||||| || Sbjct 195959 GACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGT 195900 Query 195123 TTTTACGAACACTTGCAT 195140 |||||||| | |||||| Sbjct 195899 CTTTACGAAGATTTGCAT 195882 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || || ||||| || | | || | |||||||| | |||||| || Sbjct 195851 AGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 195792 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | || ||||| ||||||||||| ||||| |||||||||||||| || Sbjct 195791 GGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 195732 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| || || ||||| ||| ||| ||||| | || | |||||||| ||||| || Sbjct 195731 GACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCAGTCAATGT 195672 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | ||||| Sbjct 195671 TTTAACAAAAATCTGCAT 195654 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || || || || || | | || | |||||||| | |||||| || Sbjct 196535 AGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 196476 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | || || || ||||||||||| ||||| |||||||||||||| ||| Sbjct 196475 GGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTT 196416 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| || || ||| ||| ||||| | || | || || || |||| || Sbjct 196415 GACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTTTTGCCAGTCAGGGT 196356 Query 195123 TTTTACGAACACTTGCAT 195140 |||||||| | |||||| Sbjct 196355 CTTTACGAAGATTTGCAT 196338 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || || || || |||| ||| || | || || || | || Sbjct 196768 TGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCCAATTGT 196709 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | |||||||| ||||||||||| ||||| |||||||||||||| Sbjct 196708 TTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTG 196649 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || |||||||| ||| ||| ||||| | || | || || || ||| Sbjct 196648 GCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTTGCCAGTC 196589 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | |||||| Sbjct 196588 AGGGTCTTTACGAAGATTTGCAT 196566 >seq9744 Length=475756 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||||||||||||||||| | || | |||||||| | || || || Sbjct 178567 AGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCTAATTGTTTGCC 178626 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || || |||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 178627 AGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATTTTGGCCTT 178686 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || |||||||| || ||| || ||||| | ||||| || || ||||||||||| Sbjct 178687 GACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTACCTGTCAAAGT 178746 Query 195123 TTTTACGAACACTTGCATT 195141 || ||||| | ||||||| Sbjct 178747 CTTAACGAAAATTTGCATT 178765 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||||||||||||||||| | || | |||||||| ||||| || || Sbjct 179023 AGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCTAGCTGTTTGCC 179082 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || || |||||||| ||||| |||||||| || || ||||| ||| Sbjct 179083 AGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCCTT 179142 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || || ||||| || || |||||||| | || | |||||||| |||||||| Sbjct 179143 GACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGT 179202 Query 195123 TTTTACGAACACTTGCATT 195141 || ||||| | ||||||| Sbjct 179203 CTTGACGAAAATTTGCATT 179221 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || || || || ||||||||||||||||||| |||| || | |||||||| Sbjct 177531 ACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAG-GTGCGGCCATCTTC 177589 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || || || ||||| || | || ||||||||||| ||||| ||||| || || || Sbjct 177590 TAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTG 177649 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| |||||| || || ||||| || || || ||||| | ||||| || || Sbjct 177650 GATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTT 177709 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| || ||||| | ||||||| Sbjct 177710 ACCTGTCAAAGTCTTGACGAAAATTTGCATT 177740 Score = 140 bits (154), Expect = 7e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| |||||||| |||||||| | | || | |||||||| | || || || Sbjct 179479 AGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCCAATTGTTTTCC 179538 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || ||||||||||||||||||||||| ||||| |||||||| || Sbjct 179539 GGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATTTTAGCTTT 179598 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || ||||| || |||||| |||||| || | |||| ||||| || ||||| || Sbjct 179599 TACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTTGCCGGTCAAGGT 179658 Query 195123 TTTTACGAACACTTGCATTT 195142 || ||||| | ||||||| Sbjct 179659 CTTCACGAAGATCTGCATTT 179678 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| ||||||||||||||||| | | || | |||||||| | || || || Sbjct 179251 AGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCTAATTGTTTGCC 179310 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || || |||||||| ||||| ||||| || ||||| |||||| ||| Sbjct 179311 AGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATTTTTGCCTT 179370 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || || ||||| || || || ||||| | ||||| || || ||||||||||| Sbjct 179371 GACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTTACCTGTCAAAGT 179430 Query 195123 TTTTACGAACACTTGCATT 195141 || ||||| | ||||||| Sbjct 179431 CTTGACGAAAATTTGCATT 179449 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || || |||||||||||||||| | || | |||||||| | || Sbjct 178790 TGCAGAGTTGATTCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCTAATTGT 178849 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 178850 TTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATTTTG 178909 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || ||||| || || |||||||| | || | |||||||| ||| Sbjct 178910 GCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTC 178969 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | ||||||| Sbjct 178970 AATGTTTTAACGAAAATTTGCATT 178993 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || || ||||||| ||||| |||| || ||||| ||||| ||| || || |||||| Sbjct 177956 CGCTGCTGGTCTGAGGGAATTCCTTGCTTATCTTGGATTTTGGCCTTAACATTTTCAATG 178015 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || || ||| |||||||| | || | ||||||||||||||| || || ||||| | | Sbjct 178016 GTATCTGAAGGCTCCACTTCCAAAGTGATCGTCTTTCCTGTCAATGTCTTAACGAATATT 178075 Query 195136 TGCATT 195141 |||||| Sbjct 178076 TGCATT 178081 >seq10951 Length=171266 Score = 120 bits (132), Expect = 7e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || ||||| || ||||| |||| |||| || | |||||||| | || ||||| Sbjct 139808 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTGTTTACC 139866 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | |||||||| ||||| || || ||||| |||||||| || || ||| Sbjct 139867 GGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGGATCTTAGCCTT 139926 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || ||||||||||| ||| || || || | || | ||||| || || | || Sbjct 139927 GACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTACCGGTGAGGGT 139986 Query 195123 TTTTACGAACACTTGCATTT 195142 || ||||| | ||||||| Sbjct 139987 CTTGACGAAGATCTGCATTT 140006 >seq10186 Length=270785 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 160577 GCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGAC 160636 |||||||| ||||||||||| | |||| | ||||||| || |||||| | || |||| Sbjct 28813 GCCAGAGATCTTTTCTACGCCCTTTGGATTCCCGATCTGTTTATGAAGCGTGTCGAAGAG 28754 Query 160637 AATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGT 160696 ||||| || ||| || | ||||| | || || || || | ||||| | || Sbjct 28753 AATGGCGACTGGTCGCTAATGTGTCCACACAAATGTCCGGGGCTACAAGATGTGTGGGGA 28694 Query 160697 TCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTG 160756 ||| || || | ||||| |||| ||||||||| || || | |||||| | | ||| Sbjct 28693 GACGAATTTGAAAAACTTTACGAAAAATACGAAAAGGAAGGCAAAGCCAATAGGACCGTA 28634 Query 160757 AAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGA 160800 || || || | || ||| | |||| | | |||||||| || Sbjct 28633 AAAGCGCAGGCGCTATGGTTTGCCATCATCGAAGCCCAAGTGGA 28590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109190372521529