Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7037 111 1e-19 seq9576 107 1e-18 >seq7037 Length=35088 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| ||||| || || | |||| |||| |||| |||||||||||||| Sbjct 22949 TCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAA 23008 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| |||||| || || | || | ||||| ||||| |||||| |||||| | Sbjct 23009 ATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTT 23068 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | |||||| || || ||||| || ||||| ||| Sbjct 23069 TCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACA 23128 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 23129 AATATCTGCATCTT 23142 >seq9576 Length=1569244 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||||||||| || ||||| || || | | ||| |||| || Sbjct 195634 ACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGATAATGTGCGTCCATCTTCA 195575 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| ||||||| ||| |||||| | || | || || ||||| | Sbjct 195574 AGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCCTGA 195515 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| ||| | | || | || | ||| || || | ||| |||||||| Sbjct 195514 ATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTTTTG 195455 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | ||||||||| ||||||||||| || Sbjct 195454 CCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||| ||||||||||| ||||| | ||| | || || Sbjct 196775 AACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTC 196716 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||| || ||||| || | ||||| || ||| | || | || |||||||| Sbjct 196715 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTG 196656 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | || | ||| | || || || | || |||||||| Sbjct 196655 AATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTT 196596 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || ||||| |||||| Sbjct 196595 GCCAGTCAGGGTCTTTACGAAGATTTGCATA 196565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | ||| ||||| || | || ||||||||| ||||||||||| || Sbjct 196108 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196049 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| || ||||| || || | ||||| || ||| | || Sbjct 196048 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGA 195989 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||| || ||||||| | | || | || | ||||| Sbjct 195988 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACT 195929 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || ||||| || || | ||||| || ||||| |||||| Sbjct 195928 TCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCATA 195881 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | ||| ||||| || | || ||||||||| ||||||||||| || Sbjct 196564 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196505 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| || ||||| || || | || ||||| ||| | || Sbjct 196504 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 196445 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||| || |||||| | | || | || | ||||| Sbjct 196444 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACT 196385 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || |||||||| || || || ||||| || ||||| |||||| Sbjct 196384 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCATA 196337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324552543758136